CX296425

Overview
NameCX296425
Unique NameCX296425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 75/194 (38.66%), Postives = 96/194 (49.48%), Query Frame = 3
Query:  120 PVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAA------KVEQITAQLQTPSDTKAFDS-VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDF 680
            P+ A P P    ++    AN  Y                  P  ++      K+ + T     P      D+ VER+K GF  FK E Y+K P  +  L  GQ+PKYMVFAC+DSRVCPS  L  +PGEAF +RN+AN+VP Y + K              LKV  IVVIGHS CGGIK L+S     ++S  F
Sbjct:   54 PIAALPGPRTTSHYSTAAANWCYATVAPRARSSTIAASLGTPAPSSSASFRPKLIRTTPVQAAPVAPALMDAAVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLKDGADDSFHF 247          
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CYNT_ECOLI (Carbonic anhydrase 1 OS=Escherichia coli (strain K12) GN=cynT PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  318 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMS 647
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS 109          
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CYNT_ECO57 (Carbonic anhydrase 1 OS=Escherichia coli O157:H7 GN=cynT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  318 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMS 647
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS 109          
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CYNT_SYNE7 (Carbonic anhydrase OS=Synechococcus elongatus (strain PCC 7942) GN=icfA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  318 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLM 644
            + ++ EG  HF+   Y  +  L+ + AKGQ P+ +   CSDSR+ P+ +     GE FV+RN  N++PP+                  L + ++VV GHS CG +KGL+
Sbjct:    1 MRKLIEGLRHFRTSYYPSHRDLFEQFAKGQHPRVLFITCSDSRIDPNLITQSGMGELFVIRNAGNLIPPFGAANGGEGASIEYAIAA-LNIEHVVVCGHSHCGAMKGLL 108          
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CAN_EMENI (Carbonic anhydrase OS=Emericella nidulans GN=AN1805 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  291 PSDTKAF-----DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFT 653
            PSD KA       + ++I E    +   K   +P  +++LA GQSP+Y+   CSDSRV  + ++    GE FV RN+AN+VP  D +              HLKV +IVV GH  CGG++  ++ T
Sbjct:    4 PSDRKAVTRYLEQTHDKIFESNRAWVASKKGADPEFFNKLAAGQSPEYLYIGCSDSRVPANEIMGLDAGEVFVHRNIANVVPTIDLSSMSVINYAVG----HLKVKHIVVCGHYNCGGVQAALTPT 125          
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CYNT_PSEAE (Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cynT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  327 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMS 647
            I +GF+ F+R+ Y     L+  LA  Q+PK +  ACSDSRV P  +   +PGE FV+RN  NIVP Y                + L V +IVV GHS CG +  + S
Sbjct:    4 IIDGFLRFQRDAYPARSQLFKSLATRQAPKALFIACSDSRVVPELLTQREPGELFVIRNAGNIVPGYGPQPGGVSASVEYAVAV-LGVGDIVVCGHSDCGAMGAIAS 109          
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CYNT_SYNY3 (Carbonic anhydrase OS=Synechocystis sp. (strain PCC 6803) GN=icfA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  318 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLM 644
            ++R+ EG   F+   +  +  L+ +L+ GQ P+ +   CSDSRV P+ +   + G+ FV+RN  NI+PPY                + L+++ I+V GHS CG +KGL+
Sbjct:    1 MQRLIEGLQKFREGYFSSHRDLFEQLSHGQHPRILFICCSDSRVDPNLITQSEVGDLFVIRNAGNIIPPYGAAN-GGEGAAMEYALVALEINQIIVCGHSHCGAMKGLL 108          
BLAST of CX296425 vs. ExPASy Swiss-Prot
Match: CYNT_HELPJ (Carbonic anhydrase OS=Helicobacter pylori J99 GN=cynT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  336 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHSACG 626
            G + F+  +YE+   LY  L   Q P  +  +C DSRV P+ +   QPGE +V+RN+ N++PP    K            + H+ V N+++ GHS CG
Sbjct:    6 GALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCG 103          
The following BLAST results are available for this feature:
BLAST of CX296425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CAHC_HORVU1.884e-2838.66Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_ECOLI4.814e-1639.09Carbonic anhydrase 1 OS=Escherichia coli (strain K... [more]
CYNT_ECO574.814e-1639.09Carbonic anhydrase 1 OS=Escherichia coli O157:H7 G... [more]
CYNT_SYNE72.023e-1433.94Carbonic anhydrase OS=Synechococcus elongatus (str... [more]
CAN_EMENI2.023e-1436.51Carbonic anhydrase OS=Emericella nidulans GN=AN180... [more]
CYNT_PSEAE2.642e-1440.19Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cy... [more]
CYNT_SYNY34.506e-1433.94Carbonic anhydrase OS=Synechocystis sp. (strain PC... [more]
CYNT_HELPJ2.472e-1234.69Carbonic anhydrase OS=Helicobacter pylori J99 GN=c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140G08SK FerrChloL1 Citrus clementina cDNA clone C05140G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296425 ID=CX296425; Name=CX296425; organism=Citrus clementina; type=EST; length=680bp
AGGGCCTTACTTCTGTTTCTCAAGCTCAATCCTCTCTCATCAAAAGCTCC
ACATTACGTCCCTCCATCGTTGCAAGGCTCAACTCTCCTGCTTCTCCTCC
TAGCCTCATCCGAAACGAGCCCGTTTTTGCTGCACCAGCTCCTATCATCA
ACCCTAACTGGAGGGAAGACATGGCAAATCAGTCGTACGAGGAAGCCATT
GAAGCTCTCAAGAAACTTCTCAAGGAGAAGGAAGACTTGAAACCTGTTGC
TGCTGCAAAAGTAGAGCAGATTACTGCGCAGCTACAGACTCCATCTGACA
CCAAAGCATTTGATTCCGTGGAGAGGATCAAAGAGGGCTTCATTCACTTC
AAGAGAGAAAAATACGAGAAAAATCCAGCTCTGTACTCTGAGCTAGCCAA
AGGCCAAAGCCCGAAGTATATGGTATTTGCCTGCTCAGACTCCAGGGTTT
GCCCGTCCCATGTGTTGGATTTTCAACCTGGGGAAGCTTTCGTGGTTCGC
AATGTTGCTAACATTGTTCCACCCTATGATCAGACTAAATATGCTGGAGT
TGGAGCTGCTGTCGAGTATGCAGTTTTGCATCTCAAGGTTTCAAACATTG
TGGTCATTGGGCACAGCGCCTGTGGTGGCATCAAAGGACTCATGTCTTTC
ACATTTGATGGAAACAACTCCACCGATTTC
back to top