CX296442

Overview
NameCX296442
Unique NameCX296442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length116
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.094e-13
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.803e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_ASPOF2.782e-1394.74Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]
UBIQ_ARATH2.782e-1394.74Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_YEAST6.197e-1392.11Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO6.197e-1392.11Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA6.197e-1392.11Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE6.197e-1392.11Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL6.197e-1392.11Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_CHLRE8.094e-1392.11Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_NEUCR1.057e-1292.11Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBL1_ORYSJ1.803e-1289.47Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC05141A09SK FerrChloL1 Citrus clementina cDNA clone C05141A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296442 ID=CX296442; Name=CX296442; organism=Citrus clementina; type=EST; length=116bp
GAGGCCATAACCCTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAA
AGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCA
TCTTTGCTGGCAAACA
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