CX296540
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.300e-32 Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = 1 Query: 22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435 H EEG++++ FAEL+M+SG+V E V W++FHS YDFGYL+KIL+ LP +F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT AF K+R+++F H K+ G LYGL Sbjct: 126 HEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32 Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 1 Query: 22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 435 H EEG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP EF +L +FF +IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT AF ++++++F K+ G LYGL Sbjct: 126 HEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32 Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 1 Query: 22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 435 H EEG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP EF +L +FF +IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT AF ++++++F K+ G LYGL Sbjct: 126 HEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32 Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = 1 Query: 22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435 H EEG+++ FAEL M+SG+V E V W++FHS YDFGYL+KILT +LP +F +LR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT AF K+R+++F H K+ G LYGL Sbjct: 126 HEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 3.201e-31 Identity = 67/139 (48.20%), Postives = 96/139 (69.06%), Query Frame = 1 Query: 22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLE 438 + E GVD+ RFAEL+M SG+V N+ + WVTFH YDFGYL+K+L+ + LP + +F + FF +YD+K++M FC +LYGGL+++A L V R VG HQAGSDSLLT F K+++ +F K++G L+GL+ Sbjct: 141 NNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQAGSDSLLTLRTFIKMKEFFFT-GSLLKYSGFLFGLD 276
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.010e-25 Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1 Query: 22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 435 H+E G++ FAEL++ SGLV E V+W+TFHS YDF YL+K +T+ LP+ +EF +L ++F N YD+K+IM+ + GL +A L + R +G HQAGSD+LLT F +IR YF + LYGL Sbjct: 136 HQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGL 271
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.655e-17 Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 25 REEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 390 + G+ + F EL+ +SGL+ + ++W+TF S YDFGYL+K +T LP F + F + +D+K ++R C S L GGL VA LDV R G HQAGSD+LLT F KI+ +F Sbjct: 138 QNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGSDALLTAATFFKIKKQFF 261
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.596e-14 Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 1 Query: 25 REEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 375 REEG+ E M + NE + WVTF +YD YL+K LTR+ LP EF ++ G +YDVK + C L GL R+A L + R VGK H AGSDS LT F K+ Sbjct: 111 REEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQM-RRVGKAHHAGSDSELTARVFTKL 228
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.085e-14 Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 25 REEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 435 R+EGVD + + + + V +VTF AYDF Y + IL LP EF T + FG +YD K + FC+ L + GL ++A+ L ++R VG+ H AGSDSL+T F K++ VY + G++YG+ Sbjct: 120 RDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFG-QVYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGSDSLMTALVFIKLKHVY---EDSRFARGLIYGI 254
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12 Identity = 46/120 (38.33%), Postives = 60/120 (50.00%), Query Frame = 1 Query: 25 REEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTR-RSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 375 REEG+ F + ++WV F +YD YLVK LT + LP +EF ++ G ++DVK I C L GL R+A L + R VGK H AGSDS LT F K+ Sbjct: 116 REEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGSDSELTARVFTKL 234 The following BLAST results are available for this feature:
BLAST of CX296540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296540 ID=CX296540; Name=CX296540; organism=Citrus clementina; type=EST; length=476bpback to top |