CX296540

Overview
NameCX296540
Unique NameCX296540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.300e-32
Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435
            H EEG++++ FAEL+M+SG+V  E V W++FHS YDFGYL+KIL+   LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:  126 HEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32
Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 435
            H EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF ++++++F       K+ G LYGL
Sbjct:  126 HEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32
Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 435
            H EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF ++++++F       K+ G LYGL
Sbjct:  126 HEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.217e-32
Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435
            H EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:  126 HEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.201e-31
Identity = 67/139 (48.20%), Postives = 96/139 (69.06%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLE 438
            + E GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGYL+K+L+ + LP  + +F   +  FF   +YD+K++M FC +LYGGL+++A  L V R VG  HQAGSDSLLT   F K+++ +F      K++G L+GL+
Sbjct:  141 NNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQAGSDSLLTLRTFIKMKEFFFT-GSLLKYSGFLFGLD 276          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.010e-25
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 435
            H+E G++   FAEL++ SGLV  E V+W+TFHS YDF YL+K +T+  LP+  +EF  +L ++F  N YD+K+IM+   +   GL  +A  L + R +G  HQAGSD+LLT   F +IR  YF      +    LYGL
Sbjct:  136 HQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGL 271          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.655e-17
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   25 REEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 390
            +  G+ +  F EL+ +SGL+ +  ++W+TF S YDFGYL+K +T   LP     F    +  F  + +D+K ++R   C S  L GGL  VA  LDV R  G  HQAGSD+LLT   F KI+  +F
Sbjct:  138 QNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGSDALLTAATFFKIKKQFF 261          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.596e-14
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   25 REEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 375
            REEG+      E  M    + NE    + WVTF  +YD  YL+K LTR+ LP    EF   ++   G  +YDVK +   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:  111 REEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQM-RRVGKAHHAGSDSELTARVFTKL 228          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.085e-14
Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   25 REEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 435
            R+EGVD   +     + +     + V +VTF  AYDF Y + IL    LP    EF T +   FG  +YD K +  FC+ L  + GL ++A+ L ++R VG+ H AGSDSL+T   F K++ VY   +      G++YG+
Sbjct:  120 RDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFG-QVYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGSDSLMTALVFIKLKHVY---EDSRFARGLIYGI 254          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 46/120 (38.33%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   25 REEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTR-RSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 375
            REEG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   ++   G  ++DVK I   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:  116 REEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGSDSELTARVFTKL 234          
The following BLAST results are available for this feature:
BLAST of CX296540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CNOT7_DANRE1.300e-3251.80CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT8_MOUSE2.217e-3250.36CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN2.217e-3250.36CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_XENTR2.217e-3252.52CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CAF1B_ARATH3.201e-3148.20Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO2.010e-2544.20Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_CAEEL7.655e-1741.27CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1E_ARATH1.596e-1440.98Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]
CAF1A_ARATH2.085e-1436.43Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1C_ARATH5.677e-1238.33Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05142H02SK FerrChloL1 Citrus clementina cDNA clone C05142H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296540 ID=CX296540; Name=CX296540; organism=Citrus clementina; type=EST; length=476bp
GATTCGGCCGAGGTTTGATCGCACAGGGAGGAAGGCGTTGACTCGGTTCG
GTTCGCCGAGTTGATGATGTCGTCGGGACTCGTCTGTAACGAGTCGGTGA
GTTGGGTCACGTTCCACAGCGCGTACGATTTCGGGTACCTGGTTAAGATC
CTCACGCGCCGGAGCTTGCCCAGTGGCCTAGACGAGTTTTTGACGGTCCT
CAGGGTGTTTTTCGGTAACAACATTTATGACGTCAAACACATTATGCGGT
TCTGTCAGAGCTTGTACGGTGGGCTGGACCGAGTGGCTCGGACGTTGGAT
GTGAGCCGGGCGGTCGGGAAGTGCCACCAGGCCGGTTCGGATAGCCTTCT
GACCTGGCATGCCTTTCAAAAAATTAGGGATGTGTATTTCGTCCACGACG
GACCGGAGAAACATGCCGGCGTATTATATGGACTAGAAGTGTACTAAATT
TAATTTTGCCCAAGGGGGGGCCCGGT
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