CX296558

Overview
NameCX296558
Unique NameCX296558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTGKHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  290 RRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  290 RRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  290 RRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTGKHETADINTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL KP
Sbjct:  289 RRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILLKP 355          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  290 RRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  289 RRLTGRHETADINTFLWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 355          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  290 RRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -3
Query:  235 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 429
            RRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  290 RRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = -3
Query:  229 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 429
            RRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRP+SNMDPYVVTSMIA+TTILWKP
Sbjct:  290 RRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP 356          
BLAST of CX296558 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = -3
Query:  235 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 429
            RRLTG+HETADINTFKWGVANRGASIRVGRDTE+EGKGYFEDRRPASNMDPYVVT MIAETTILW
Sbjct:  290 RRLTGRHETADINTFKWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYVVTGMIAETTILW 354          
The following BLAST results are available for this feature:
BLAST of CX296558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA3_PHAVU1.410e-3194.03Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA2_SOYBN1.410e-3194.03Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_PHAVU1.410e-3194.03Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA1_PEA1.410e-3195.52Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLN11_ARATH1.410e-3194.03Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA1_SOYBN1.841e-3192.54Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLN12_ARATH1.841e-3194.03Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA_LACSA3.141e-3196.92Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA1_MEDSA3.141e-3192.54Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA1_MAIZE3.141e-3195.38Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionC05146B02SK FerrChloL1 Citrus clementina cDNA clone C05146B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296558 ID=CX296558; Name=CX296558; organism=Citrus clementina; type=EST; length=431bp
TCCATAATGTTATTAAATTAAATGTTTACATTATTCAACCCAATAGGACA
GCAGGAAGCAATGAACCCACTGTTGCAAATACAGGGGCAGAGATTGAAAC
AAGACAAAAGCTGAACTACTACTAATAAAGCATCCTTAGCAGACCACAAT
TCTGTCGTGAACTCGTGAATCCTGAGTAAAGCCAGCAGATCAAACAAAAT
ATTTCAAAGGTTGCTAGAGGAGCATTCATGGCTTCCACAGAATAGTGGTT
TCTGCAATCATGGAGGTGACAACATATGGATCCATGTTAGAAGCAGGTCT
CCTGTCCTCAAAGTAACCCTTTCCTTCTTTCTCTGTGTCTCGTCCAACAC
GGATTGATGCCCCACGGTTAGCAACACCCCATTTGAAAGTGTTGATGTCA
GCTGTTTCATGTTTGCCAGTGAGTCGGCGTT
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