CX296561

Overview
NameCX296561
Unique NameCX296561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_RHOCS (Methylthioribose-1-phosphate isomerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=mtnA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.116e-14
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 3 
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSG-QEIVIEERSAKEL 329
            +  ETRP +QG+ LTA+EL H  +P           LM+ G V   +VG DRV A GD  NKIGTY  AL A    + F+VA P ++ID  L  G   I IE R  +E+
Sbjct:  193 WVDETRPRSQGAFLTAWELGHHGVPHTVVADNTGGHLMQHGLVDLAVVGTDRVTARGDVANKIGTYLKALAAHDTGVPFWVALPGSTIDWLLEDGVHGIPIETRGDEEV 301
The following BLAST results are available for this feature:
BLAST of CX296561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_RHOCS1.116e-1443.12Methylthioribose-1-phosphate isomerase OS=Rhodospi... [more]

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Properties
Property NameValue
Genbank descriptionC05146B05SK FerrChloL1 Citrus clementina cDNA clone C05146B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296561 ID=CX296561; Name=CX296561; organism=Citrus clementina; type=EST; length=335bp
GAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCACT
GCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACTC
TGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCG
GAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAACC
TACAGCCTTGCATTATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGC
TGCTCCACTGACGTCAATTGATTTAACCCTTTCTTCTGGACAAGAGATTG
TCATAGAGGAGAGGTCTGCTAAAGAATTGTTGTGC
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