CX296566

Overview
NameCX296566
Unique NameCX296566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.014e-40
Identity = 88/172 (51.16%), Postives = 116/172 (67.44%), Query Frame = -3
Query:  165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665
            GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    I+   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPL LA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL++P  NN
Sbjct:   63 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.855e-40
Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = -3
Query:  165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665
            GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I+   + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ F  LKVKE+K GRLAM +M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:   83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 87/172 (50.58%), Postives = 113/172 (65.70%), Query Frame = -3
Query:  165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665
            GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    ++   L+     ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+ P  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E+LA H++DP  NN
Sbjct:   84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39
Identity = 92/171 (53.80%), Postives = 112/171 (65.50%), Query Frame = -3
Query:  165 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 662
            +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L PGG FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:   85 VSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.763e-38
Identity = 89/173 (51.45%), Postives = 112/173 (64.74%), Query Frame = -3
Query:  165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665
            GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK G+ +     L+Y G    +    + AV+  ++VL+G  E +RI    G+   + L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL +P ANN
Sbjct:   81 GLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 90/174 (51.72%), Postives = 114/174 (65.52%), Query Frame = -3
Query:  165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665
            GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G    +    + AV+  +++L+G  E +RI NGLD     + L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL DP ANN
Sbjct:   84 GLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 82/172 (47.67%), Postives = 111/172 (64.53%), Query Frame = -3
Query:  165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665
            GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G    ++   + A+ A ++VL+G  E Y +  G   ++ D L+ GG FDPLGL  DP++FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   82 GLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31
Identity = 80/178 (44.94%), Postives = 110/178 (61.80%), Query Frame = -3
Query:  147 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAV-IAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 665
            GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G    ++   + A+   +++L+G  E YRI  G   ++ D L+PG  FD LGLA+D + FA LKVKE+KNGRLAMF+M GFF+QA V+ +  +ENLA HL     NN L+ ++
Sbjct:   87 GLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVT 262          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 77/178 (43.26%), Postives = 103/178 (57.87%), Query Frame = -3
Query:  150 SFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKHLSDPFANNLLTVI 671
            S GL + P +  +Y+  ELIH RWAML   G I+PEA             W K      + G    Y G+ +P   +  ++A E + +   E+ R     D E K +PGG FDPLG +KDP +F  LKVKEIKNGRLA+ A++GF +Q  AY+ G GP+ENLA HL+DP+ NN+  VI
Sbjct:   71 SLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN--------WVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATHLADPWHNNIGDVI 238          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 74/135 (54.81%), Postives = 89/135 (65.93%), Query Frame = -3
Query:  165 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 554
            KFG     EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:    9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
The following BLAST results are available for this feature:
BLAST of CX296566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB21_SOYBN1.014e-4051.16Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_MAIZE3.855e-4051.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT6.575e-4050.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.499e-3953.80Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_SOLLC2.763e-3851.45Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU6.154e-3851.72Chlorophyll a-b binding protein of LHCII type III,... [more]
CB48_MAIZE1.516e-3647.67Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO5.579e-3144.94Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB11_SOLLC5.222e-2943.26Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB22_PINSY1.519e-2854.81Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionC05146B10SK FerrChloL1 Citrus clementina cDNA clone C05146B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296566 ID=CX296566; Name=CX296566; organism=Citrus clementina; type=EST; length=700bp
GAGGCCTCGTGCCGAATTCGGCACGAGGTAAGGTTTCAACATCTTGGAAA
TGTCTTGATGATGAGATGTACAATGCATTTTAGATTCGAGTGAAAAGAAC
ACCAGAACAACTGAAATCACAGGGTGGGAGCTCTCTCTGCGTTTCCGGAG
ATCACGGTAAGCAAGTTGTTGGCAAAAGGATCACTGAGATGTTTAGCAAG
GTTCTCAACTGGACCTTCACCTGTGACATAAGCTTGGAGAAAGAAACCAA
GCATGGCAAACATTGCAAGTCTTCCATTCTTGATCTCCTTCACTTTTAGC
AATGCAAATTGGTCAGGATCCTTTGCTAATCCCAGTGGGTCAAATGGACC
ACCTGGGTGAAGCTTGTCCTCCAAATCCAAACCGTTGGTGATTCTATAAT
ATTCAGCACCACCTACAAGAACAATCTCAGCAATGACAGCAAAAACAAGG
TTGATTGGGATGTTCTTTCCGAAGTAGTTCAATGTGTTTCCATCAAGAAG
TAGAGCTCCAGTCTTGAACCAGACAGCTTCAGGACCACAGTTAGCACCAA
ACTTGTTAAAGGCTTCAGGAATGATGAAACCAGCAGCACCAAGCATGGCC
CATCTGGCATGAATCAATTCATATGCCTGATATTTGCTGAAGTCGTCTGG
TTTCTTGCTGAGACCAAAGGATCGTACCATAGTCTCCGGGACTTCTCGGT
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