CX296566
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.014e-40 Identity = 88/172 (51.16%), Postives = 116/172 (67.44%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EA WFK G+ + L+Y G I+ + A+ A +++L+G E YRI G ++ D ++PGG FDPL LA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL++P NN Sbjct: 63 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.855e-40 Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKE+K GRLAM +M GFF+QA VTG+GP+ENLA H++DP NN Sbjct: 83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40 Identity = 87/172 (50.58%), Postives = 113/172 (65.70%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWAMLGA G + PE + G G EA WFK G+ + L+Y G ++ L+ ++VL+G E YRI G ++ D L+PGG FDPLGLA+ P FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E+LA H++DP NN Sbjct: 84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39 Identity = 92/171 (53.80%), Postives = 112/171 (65.50%), Query Frame = -3 Query: 165 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 662 +S P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G E D L PGG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN Sbjct: 85 VSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.763e-38 Identity = 89/173 (51.45%), Postives = 112/173 (64.74%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ ++VL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN Sbjct: 81 GLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38 Identity = 90/174 (51.72%), Postives = 114/174 (65.52%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F++ +A E+IH RWAMLGA G + PE K+ E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL DP ANN Sbjct: 84 GLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36 Identity = 82/172 (47.67%), Postives = 111/172 (64.53%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWA+ G + PE + G G E VWFK G+ + L++ G ++ + A+ A ++VL+G E Y + G ++ D L+ GG FDPLGL DP++FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 82 GLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31 Identity = 80/178 (44.94%), Postives = 110/178 (61.80%), Query Frame = -3 Query: 147 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAV-IAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 665 GLS P+ F+K + E+IH+R AM A G I PE + G G EAVWFK GA + L+Y G ++ + A+ +++L+G E YRI G ++ D L+PG FD LGLA+D + FA LKVKE+KNGRLAMF+M GFF+QA V+ + +ENLA HL NN L+ ++ Sbjct: 87 GLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVT 262
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29 Identity = 77/178 (43.26%), Postives = 103/178 (57.87%), Query Frame = -3 Query: 150 SFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKHLSDPFANNLLTVI 671 S GL + P + +Y+ ELIH RWAML G I+PEA W K + G Y G+ +P + ++A E + + E+ R D E K +PGG FDPLG +KDP +F LKVKEIKNGRLA+ A++GF +Q AY+ G GP+ENLA HL+DP+ NN+ VI Sbjct: 71 SLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN--------WVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATHLADPWHNNIGDVI 238
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28 Identity = 74/135 (54.81%), Postives = 89/135 (65.93%), Query Frame = -3 Query: 165 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 554 KFG EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G E D L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN Sbjct: 9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138 The following BLAST results are available for this feature:
BLAST of CX296566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296566 ID=CX296566; Name=CX296566; organism=Citrus clementina; type=EST; length=700bpback to top |