CX296566

Overview
NameCX296566
Unique NameCX296566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.286e-27
Identity = 75/174 (43.10%), Postives = 101/174 (58.05%), Query Frame = -3
Query:  150 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 665
            GL+  P++F +++  E+ H RWAML   G ++PEA      N      W    A L DG    Y G  +P  NL   +  E + +  AE  R T   D E K +PGG FDPLG +KDP +F  LK+KEIKNGRLAM A +GF + Q+   G GP+ENLA HL+DP+ NN+  ++
Sbjct:   72 GLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL--GNWVKAQEW----AALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 237          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 81/181 (44.75%), Postives = 104/181 (57.46%), Query Frame = -3
Query:  156 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 635
            K+ AY E+I+ R+AMLGAAG I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       D  +PGGP F+PLG  KD      LK+KEIKNGRLAM A+LG+F+QA VTG GP +NL  HL+DP  NN+LT
Sbjct:   94 KWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLT 268          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  165 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 428
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  165 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 428
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  165 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 428
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  165 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 428
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  165 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 428
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.218e-26
Identity = 63/107 (58.88%), Postives = 75/107 (70.09%), Query Frame = -3
Query:  150 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 452
            +L+  +  +++L+G  E YR  N      G DL D+L+PGGPFDPLGLA DPD F  LKVKEIKNGRLAM  MLGF+ QA VTGEGPVEN   HL DP A+N LT +
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAL 115          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 75/181 (41.44%), Postives = 102/181 (56.35%), Query Frame = -3
Query:  156 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 635
            ++ AY E+I+ R+AMLGA G I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       +  +PGGPF +PLG  KD      LK+KE+KNGRLAM A+LG+F+Q  VTG GP +NL  H++DP  NN+LT
Sbjct:   96 RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLT 270          
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = -3
Query:  141 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 635
            +++  ELIH RWAML   G +  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA  TG+GP+ N A HLSDP    ++   S +
Sbjct:  135 RFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290          
The following BLAST results are available for this feature:
BLAST of CX296566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB121_HORVU1.286e-2743.10Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB13_SOLLC6.384e-2744.75Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2D_SOLLC8.337e-2765.56Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.337e-2765.56Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.337e-2765.56Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC1.422e-2664.44Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.422e-2664.44Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_EUGGR9.218e-2658.88Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_PEA1.331e-2441.44Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4A_ARATH1.738e-2439.52Chlorophyll a-b binding protein CP29.1, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionC05146B10SK FerrChloL1 Citrus clementina cDNA clone C05146B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296566 ID=CX296566; Name=CX296566; organism=Citrus clementina; type=EST; length=700bp
GAGGCCTCGTGCCGAATTCGGCACGAGGTAAGGTTTCAACATCTTGGAAA
TGTCTTGATGATGAGATGTACAATGCATTTTAGATTCGAGTGAAAAGAAC
ACCAGAACAACTGAAATCACAGGGTGGGAGCTCTCTCTGCGTTTCCGGAG
ATCACGGTAAGCAAGTTGTTGGCAAAAGGATCACTGAGATGTTTAGCAAG
GTTCTCAACTGGACCTTCACCTGTGACATAAGCTTGGAGAAAGAAACCAA
GCATGGCAAACATTGCAAGTCTTCCATTCTTGATCTCCTTCACTTTTAGC
AATGCAAATTGGTCAGGATCCTTTGCTAATCCCAGTGGGTCAAATGGACC
ACCTGGGTGAAGCTTGTCCTCCAAATCCAAACCGTTGGTGATTCTATAAT
ATTCAGCACCACCTACAAGAACAATCTCAGCAATGACAGCAAAAACAAGG
TTGATTGGGATGTTCTTTCCGAAGTAGTTCAATGTGTTTCCATCAAGAAG
TAGAGCTCCAGTCTTGAACCAGACAGCTTCAGGACCACAGTTAGCACCAA
ACTTGTTAAAGGCTTCAGGAATGATGAAACCAGCAGCACCAAGCATGGCC
CATCTGGCATGAATCAATTCATATGCCTGATATTTGCTGAAGTCGTCTGG
TTTCTTGCTGAGACCAAAGGATCGTACCATAGTCTCCGGGACTTCTCGGT
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