CX296572

Overview
NameCX296572
Unique NameCX296572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.166e-45
Identity = 79/115 (68.70%), Postives = 98/115 (85.22%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR PCC+K+G+KKGPWTPEED IL+++I++HG  NWRA+P   GLLRC KSCRLRW NYLRP IKRG+F++ EE+ II+L  +LGNRW+AIA+ LP RTDN+IKN W+THLKKK
Sbjct:    1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.988e-45
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   67 PCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            PCC KMG+K+GPWT EED IL++ IKK G   WR+LPK+AGLLRCGKSCRLRW+NYLRP +KRG  + +EE+ I+ LH +LGNRWS IA R+PGRTDNEIKN W+THL+KK
Sbjct:   16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.988e-45
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR PCCEK+GL++GPWT EED+ L++HI  +G   WRA+PK AGLLRCGKSCRLRW NYLRPD+KRG FS+ EE  I++LH  LGNRWS IAA+LPGRTDNEIKN W+T LKK+
Sbjct:    1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKR 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.430e-45
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK    KG WT EED  LI++IK HG   WR+LP+ AGL RCGKSCRLRWINYLRPD+KRGNF+ EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH+K+K
Sbjct:    1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.868e-45
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGRAPCCEK+G+K+G WT EED+IL  +I+ +G  +WR+LPK AGL RCGKSCRLRWINYLR D+KRGN + EEEE ++ LH  LGNRWS IA  LPGRTDNEIKN W++HL +K
Sbjct:    1 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.289e-44
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR PCC+K+G+KKGPWT EED+ LI+ I  +G   WRA+PK AGL RCGKSCRLRW NYLRPD+KRG  S  EE+ +I+LH  LGNRWS IAARLPGRTDNEIKN W+TH+KKK
Sbjct:    1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.198e-44
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   55 MGRAPCCEK-MGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCC++  G+KKGPW PEED  L A+I ++G+ NWR+LPK AGL RCGKSCRLRW+NYLRPDI+RG FS  EE TI+ LH +LGN+WS IA  LPGRTDNEIKN W+TH++KK
Sbjct:    1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKK 116          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.819e-42
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR  CC K  L+KG W+PEED  L+ +I +HGH  W ++PK AGL RCGKSCRLRWINYLRPD+KRG FS++EE  II LH  LGNRWS IA RLPGRTDNEIKN W++ LKKK
Sbjct:    1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.971e-41
Identity = 74/118 (62.71%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAA 408
            MGR  CC K G+K+G WT +ED  L A++K HG   WR +P++AGL RCGKSCRLRW+NYLRP+I+RGN S +EE+ II LH +LGNRWS IA RLPGRTDNEIKN W++ L ++A A
Sbjct:    1 MGRRACCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRAGA 118          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.129e-40
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            M R PC EK GLK+GPWT EED+ L +++ K+G   WR +PK AGL RCGKSCRLRW+NYLRPD+K+G  ++ EE  II LH  LGNRWS IA  +PGRTDNEIKN W+TH+KKK
Sbjct:    1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKK 115          
The following BLAST results are available for this feature:
BLAST of CX296572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB06_ANTMA1.166e-4568.70Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB5_ARATH1.988e-4569.37Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB2_PHYPA1.988e-4570.43Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB32_ARATH4.430e-4569.57Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB12_ARATH9.868e-4567.83Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
ODO1_PETHY1.289e-4470.43Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB39_ARATH2.198e-4468.10Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB86_ARATH7.819e-4267.83Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYBC_MAIZE2.971e-4162.71Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB15_ANTMA1.129e-4064.35Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05146C04SK FerrChloL1 Citrus clementina cDNA clone C05146C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296572 ID=CX296572; Name=CX296572; organism=Citrus clementina; type=EST; length=741bp
CCGGGCTGCAGATTCGGCCGAGGAGTACTCCACTACTTTGAAAGAATTAA
CAAGATGGGGAGGGCTCCCTGCTGTGAGAAGATGGGATTGAAGAAGGGGC
CATGGACTCCTGAAGAAGATAGAATTTTAATCGCCCACATCAAAAAACAC
GGCCATCCCAATTGGCGTGCGTTACCAAAGCAAGCCGGTTTGTTGAGATG
TGGAAAGAGTTGCAGACTCCGATGGATAAATTACTTGAGGCCTGATATTA
AGAGGGGAAACTTCAGCAAAGAAGAAGAGGAAACTATCATCAACTTGCAT
GACATGTTGGGGAATAGGTGGTCAGCTATCGCAGCAAGGTTACCAGGAAG
GACAGATAATGAGATTAAAAACGTGTGGCACACGCACTTGAAGAAGAAAG
CAGCAGCAGTACTGAAGCAAAACCAGAAGGCCAATACTAATACTAATAAT
AATAATAATTCGGATGATCACAAACAAAACTCTAAAGCAACAACAGCTCA
TGATCATCAGTCTGCAGAATCTGCAATGTCTCCCCAGGCATCATCTTCCA
GTGATGAGCTCTCCTCGGTCACTACTGGAGAAACAAATAATAATAATAAT
AGTGATCGGTACTGCATGGATAAGTATGTGAAAGGTGATCATGAGCAAAA
TGTTGACTCGTTTGAAAGTTTTCCTGTGATTGATGAAAGCTTCTGGACAG
ACACCAGCTTATCTGAAAATTTCAGCATTTGACATCAGATT
back to top