CX296572

Overview
NameCX296572
Unique NameCX296572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.318e-40
Identity = 75/116 (64.66%), Postives = 93/116 (80.17%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHP-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGRAPCC+K  +KKGPW+PEED  L ++I+  G   NW ALP++ GL RCGKSCRLRW+NYLRP+IK G FS+EEE  I +L+  +G+RWS IAA+LPGRTDN+IKN W+T LKKK
Sbjct:    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.195e-39
Identity = 78/149 (52.35%), Postives = 104/149 (69.80%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHP-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK-AAAVLKQNQKAXXXXXXXXXSDDHKQNSKATT 495
            MGRAPCC+K  +K+GPW+PEED  L  +I+K+G+  NW + P +AGL RCGKSCRLRW+NYLRP+IK G+FS+EE+  I +L   +G+RWS IAA LPGRTDN+IKN W+T L+KK  ++    +  A         S D K+ +  TT
Sbjct:    1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSSSSDSSSSAMASPYLNPISQDVKRPTSPTT 149          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.380e-38
Identity = 73/121 (60.33%), Postives = 93/121 (76.86%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHP-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAAVL 414
            MGRAPCC+K  +K+GPW+PEED  L  +I+K G   NW ALP +AGL RCGKSCRLRW+NYLRP+I+ G+F++EE+  I +L   +G+RWS IAA L GRTDN+IKN W+T LKKK  A +
Sbjct:    1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIATM 121          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.440e-37
Identity = 65/103 (63.11%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   91 KKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            KKG WT EED+IL+ ++K HG  +W  + K+ GL RCGKSCRLRW+NYL P++KRGNF+++EE+ II LH +LGNRWS IA R+PGRTDN++KN W+THL KK
Sbjct:   17 KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.203e-36
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L +G WT  ED+IL  +I  HG   W  LP QAGL RCGKSCRLRW NYLRP IKRGN S +EEE II LH++LGNRWS IA RLPGRTDNEIKN W+++L+K+
Sbjct:   14 LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKR 117          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.759e-36
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 396
            LKKGPWT  ED IL+ ++KKHG  NW A+ K  GL RCGKSCRLRW N+LRP++K+G F+ EEE  II LH  +GN+W+ +AA LPGRTDNEIKN W+T +K+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.759e-36
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 396
            LKKGPWT  ED IL+ ++KKHG  NW A+ K  GL RCGKSCRLRW N+LRP++K+G F+ EEE  II LH  +GN+W+ +AA LPGRTDNEIKN W+T +K+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   91 KKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            KKG WT EED+IL+ +++ HG  +W  + K+ GL RCGKSCRLRW+NYL P++ RGNF+ +EE+ II LH +LGNRWS IA R+PGRTDN++KN W+THL KK
Sbjct:   13 KKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.427e-35
Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            ++KG W+PEED  L  HI +HG   W ++P+ A L RCGKSCRLRWINYLRPD+KRG FS++EE+ I+ LH +LGNRWS IA+ LPGRTDNEIKN W++ +KKK
Sbjct:   14 VRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKK 117          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            +KKG W+PEED  L+ ++  +G   W  + K AGL RCGKSCRLRWINYLRPD+KRG FS +EE+ II  H +LGNRWS IAARLPGRTDNEIKN W++ +KK+
Sbjct:   18 MKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 121          
The following BLAST results are available for this feature:
BLAST of CX296572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RAX3_ARATH7.318e-4064.66Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
RAX1_ARATH6.195e-3952.35Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
RAX2_ARATH1.380e-3860.33Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
WER_ARATH4.440e-3763.11Transcription factor WER OS=Arabidopsis thaliana G... [more]
TT2_ARATH2.203e-3666.35Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
GAM1_ORYSJ3.759e-3662.14Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI3.759e-3662.14Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB23_ARATH4.909e-3661.17Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB3_HORVU5.427e-3563.46Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB46_ARATH9.258e-3563.46Transcription factor MYB46 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05146C04SK FerrChloL1 Citrus clementina cDNA clone C05146C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296572 ID=CX296572; Name=CX296572; organism=Citrus clementina; type=EST; length=741bp
CCGGGCTGCAGATTCGGCCGAGGAGTACTCCACTACTTTGAAAGAATTAA
CAAGATGGGGAGGGCTCCCTGCTGTGAGAAGATGGGATTGAAGAAGGGGC
CATGGACTCCTGAAGAAGATAGAATTTTAATCGCCCACATCAAAAAACAC
GGCCATCCCAATTGGCGTGCGTTACCAAAGCAAGCCGGTTTGTTGAGATG
TGGAAAGAGTTGCAGACTCCGATGGATAAATTACTTGAGGCCTGATATTA
AGAGGGGAAACTTCAGCAAAGAAGAAGAGGAAACTATCATCAACTTGCAT
GACATGTTGGGGAATAGGTGGTCAGCTATCGCAGCAAGGTTACCAGGAAG
GACAGATAATGAGATTAAAAACGTGTGGCACACGCACTTGAAGAAGAAAG
CAGCAGCAGTACTGAAGCAAAACCAGAAGGCCAATACTAATACTAATAAT
AATAATAATTCGGATGATCACAAACAAAACTCTAAAGCAACAACAGCTCA
TGATCATCAGTCTGCAGAATCTGCAATGTCTCCCCAGGCATCATCTTCCA
GTGATGAGCTCTCCTCGGTCACTACTGGAGAAACAAATAATAATAATAAT
AGTGATCGGTACTGCATGGATAAGTATGTGAAAGGTGATCATGAGCAAAA
TGTTGACTCGTTTGAAAGTTTTCCTGTGATTGATGAAAGCTTCTGGACAG
ACACCAGCTTATCTGAAAATTTCAGCATTTGACATCAGATT
back to top