CX296572

Overview
NameCX296572
Unique NameCX296572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   76 EKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            E    KKG WT EED IL+ ++  HG   W  + ++ GL RCGKSCRLRW+NYL P++ +GNF+++EE+ II LH +LGNRWS IA R+PGRTDN++KN W+THL KK
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   76 EKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            E    KKG WT EED IL+ ++  HG   W  + ++ GL RCGKSCRLRW+NYL P++ +GNF+++EE+ II LH +LGNRWS IA R+PGRTDN++KN W+THL KK
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 64/107 (59.81%), Postives = 83/107 (77.57%), Query Frame = 1
Query:   79 KMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            K  +K+G W PEED IL ++++ HG  NW  + +++GL R GKSCRLRW NYLRP+IKRG+ S +E++ II +H +LGNRWS IA RLPGRTDNE+KN W+THL KK
Sbjct:    9 KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.001e-34
Identity = 71/149 (47.65%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   55 MGRAPC-CEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKAXXXXXXXXXSDDHKQNSKATTA 498
            M + PC  + + ++KGPWT EED ILI +I  HG   W +L + AGL R GKSCRLRW+NYLRPD++RGN + EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W T ++K    + + +Q +         + DH  N +A+++
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKH---MEQGDQSSSTTFNNGQMNLDHSCNDQASSS 146          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.837e-34
Identity = 69/139 (49.64%), Postives = 89/139 (64.03%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKAXXXXXXXXXSDDHKQNSKATTAHD 504
            ++KGPWT EED ILI +I  HG   W +L K AGL R GKSCRLRW+NYLRPD++RGN + EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W T ++K     +KQ+            S +    + +T++H+
Sbjct:   20 VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK----YIKQSDVTTTSSVGSHHSSEINDQAASTSSHN 154          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.024e-33
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   85 GLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            GL+KG WT EED +L   I K+G   W  +P +AGL RC KSCRLRW+NYL+P IKRG FS +E + ++ LH +LGNRWS IA RLPGRT N++KN W+THL KK
Sbjct:    7 GLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.746e-33
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   91 KKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            +KG W+PEED  L + I  +GH  W  +P +AGL R GKSCRLRWINYLRP +KR   S EEEETI+  H  LGN+WS IA  LPGRTDNEIKN WH+HLKKK
Sbjct:   11 RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.978e-33
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   85 GLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAAVLKQNQK 429
            GL+KG WT EED +L   I K+G   W  +P +AGL RC KSCRLRW+NYL+P IKRG  S +E + ++ LH +LGNRWS IA RLPGRT N++KN W+THL KK     K   K
Sbjct:    7 GLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHEPCCKIKMK 121          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.889e-33
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1
Query:   85 GLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            GL+KG WT EED +L   I K+G   W  +P +AGL RC KSCRLRW+NYL+P IKRG  S +E + ++ LH +LGNRWS IA RLPGRT N++KN W+THL KK
Sbjct:    7 GLRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.521e-32
Identity = 63/115 (54.78%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MG +P     GL+KG WT EED +L   I K+G   W  +P + GL RC KSCRLRW+NYL+P IKRG    +E + ++ LH +LGNRWS IA RLPGRT N++KN W+THL KK
Sbjct:    1 MGESP----KGLRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
The following BLAST results are available for this feature:
BLAST of CX296572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GL1_ARATH9.258e-3557.41Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY9.258e-3557.41Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB82_ARATH1.209e-3459.81Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA6.001e-3447.65Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH7.837e-3449.64Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MY114_ARATH1.024e-3360.00Transcription factor MYB114 OS=Arabidopsis thalian... [more]
LAF1_ARATH1.746e-3364.08Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB75_ARATH2.978e-3355.65Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB90_ARATH3.889e-3359.05Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MY113_ARATH2.521e-3254.78Transcription factor MYB113 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC05146C04SK FerrChloL1 Citrus clementina cDNA clone C05146C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296572 ID=CX296572; Name=CX296572; organism=Citrus clementina; type=EST; length=741bp
CCGGGCTGCAGATTCGGCCGAGGAGTACTCCACTACTTTGAAAGAATTAA
CAAGATGGGGAGGGCTCCCTGCTGTGAGAAGATGGGATTGAAGAAGGGGC
CATGGACTCCTGAAGAAGATAGAATTTTAATCGCCCACATCAAAAAACAC
GGCCATCCCAATTGGCGTGCGTTACCAAAGCAAGCCGGTTTGTTGAGATG
TGGAAAGAGTTGCAGACTCCGATGGATAAATTACTTGAGGCCTGATATTA
AGAGGGGAAACTTCAGCAAAGAAGAAGAGGAAACTATCATCAACTTGCAT
GACATGTTGGGGAATAGGTGGTCAGCTATCGCAGCAAGGTTACCAGGAAG
GACAGATAATGAGATTAAAAACGTGTGGCACACGCACTTGAAGAAGAAAG
CAGCAGCAGTACTGAAGCAAAACCAGAAGGCCAATACTAATACTAATAAT
AATAATAATTCGGATGATCACAAACAAAACTCTAAAGCAACAACAGCTCA
TGATCATCAGTCTGCAGAATCTGCAATGTCTCCCCAGGCATCATCTTCCA
GTGATGAGCTCTCCTCGGTCACTACTGGAGAAACAAATAATAATAATAAT
AGTGATCGGTACTGCATGGATAAGTATGTGAAAGGTGATCATGAGCAAAA
TGTTGACTCGTTTGAAAGTTTTCCTGTGATTGATGAAAGCTTCTGGACAG
ACACCAGCTTATCTGAAAATTTCAGCATTTGACATCAGATT
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