CX296572

Overview
NameCX296572
Unique NameCX296572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.616e-32
Identity = 66/126 (52.38%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   55 MGRAPC-CEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWH-----THLKKKAAAVL 414
            M + PC    + ++KGPWT EED ILI  I  HG   W  + + AGL R GKSCRLRW+NYLRPD++RGN + EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W+      H+K+  A+ +
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFI 126          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKA 402
            ++KGPWT +ED  L+  ++  G   W  + K +GL R GKSCRLRW+NYL P +KRG  S  EE  I+ LH   GNRWS IA RLPGRTDNEIKN W TH++KKA
Sbjct:    8 IRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKA 112          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKA 402
            ++KGPWT +ED  L+  ++  G   W  + K +GL R GKSCRLRW+NYL P +K G  S +EE  II LH   GNRWS IA RLPGRTDNEIKN W TH++KKA
Sbjct:    8 MRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKA 112          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   76 EKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKA 402
            ++ G +KGPWT +ED +L+  +   G   W  + K +GL R GKSCRLRW+NYL P +KRG  + +EE  ++ LH   GNRWS IA +LPGRTDNEIKN W TH++KKA
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKA 111          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.082e-30
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   91 KKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKA 402
            +KGPWT +ED +L+  +   G   W  + K +GL R GKSCRLRW+NYL P +KRG  + +EE  ++ LH   GNRWS IA +LPGRTDNEIKN W TH++KKA
Sbjct:    9 RKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKA 112          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.650e-25
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   79 KMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWH 381
            K    K  W PEEDRIL  ++ ++G   W  +PK+ GL     SCR RW+N+L+P +K+G F+ EEE+ ++ LH +LGN+WS +A   PGRTDNEIKN W+
Sbjct:   13 KKTFTKSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWN 113          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.602e-24
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED  +I  +KK+G  +W  + KQ    R GK CR RW N+L P++K+ ++++EE+  I   H +LGNRW+ IA  LPGRTDN +KN W++ +K+K
Sbjct:   81 LVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRG-RMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I H++K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H  LGNRW+ IA  LPGRTDN +KN W++ +++K
Sbjct:   19 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 121          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  +KK+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H +LGNRW+ IA  LPGRTDN +KN W++ +K+K
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  +KK+G   W  + K     R GK CR RW N+L P++K+  +++EE+  I   H +LGNRW+ IA  LPGRTDN +KN W++ +K+K
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
The following BLAST results are available for this feature:
BLAST of CX296572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB40_ANTMA5.616e-3252.38Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYBA2_ORYSJ2.787e-3157.14Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ8.110e-3157.14Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MYB48_ARATH8.110e-3153.21Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH3.082e-3054.81Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MY104_ARATH6.650e-2548.51Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYBB_XENLA9.602e-2448.08Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYB_AVIMB2.794e-2346.15Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBB_CHICK2.794e-2347.12Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBB_MOUSE8.129e-2347.12Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05146C04SK FerrChloL1 Citrus clementina cDNA clone C05146C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296572 ID=CX296572; Name=CX296572; organism=Citrus clementina; type=EST; length=741bp
CCGGGCTGCAGATTCGGCCGAGGAGTACTCCACTACTTTGAAAGAATTAA
CAAGATGGGGAGGGCTCCCTGCTGTGAGAAGATGGGATTGAAGAAGGGGC
CATGGACTCCTGAAGAAGATAGAATTTTAATCGCCCACATCAAAAAACAC
GGCCATCCCAATTGGCGTGCGTTACCAAAGCAAGCCGGTTTGTTGAGATG
TGGAAAGAGTTGCAGACTCCGATGGATAAATTACTTGAGGCCTGATATTA
AGAGGGGAAACTTCAGCAAAGAAGAAGAGGAAACTATCATCAACTTGCAT
GACATGTTGGGGAATAGGTGGTCAGCTATCGCAGCAAGGTTACCAGGAAG
GACAGATAATGAGATTAAAAACGTGTGGCACACGCACTTGAAGAAGAAAG
CAGCAGCAGTACTGAAGCAAAACCAGAAGGCCAATACTAATACTAATAAT
AATAATAATTCGGATGATCACAAACAAAACTCTAAAGCAACAACAGCTCA
TGATCATCAGTCTGCAGAATCTGCAATGTCTCCCCAGGCATCATCTTCCA
GTGATGAGCTCTCCTCGGTCACTACTGGAGAAACAAATAATAATAATAAT
AGTGATCGGTACTGCATGGATAAGTATGTGAAAGGTGATCATGAGCAAAA
TGTTGACTCGTTTGAAAGTTTTCCTGTGATTGATGAAAGCTTCTGGACAG
ACACCAGCTTATCTGAAAATTTCAGCATTTGACATCAGATT
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