CX296572

Overview
NameCX296572
Unique NameCX296572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  ++K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H  LGNRW+ IA  LPGRTDN IKN W++ +++K
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          

HSP 2 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 1
Query:   58 GRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 390
            G  P   K  L K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P++ +G ++KEE++ +I L    G  RWS IA  L GR   + +  WH HL
Sbjct:   28 GLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 138          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  ++K+G   W  + K     R GK CR RW N+L P++K+ ++++ E+  I   H  LGNRW+ IA  LPGRTDN IKN W++ +++K
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.214e-20
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK-----AAAVLKQNQKA 432
            L KGPW+ EED  +I  ++K+G   W  + +     R GK CR RW N+L P I +  +++EEE T+I  H + GN+W+ +   LPGR+DN IKN W++ +KKK     A+ +L Q Q +
Sbjct:   85 LVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPG-RIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDSYYASGLLDQCQSS 203          

HSP 2 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   94 KGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 390
            KG WTPEED +L   +++    NW+ +  +    R    C  RW   L P++ +G +SKEE+ TII+L +  G  +WS I+  LPGR   + +  WH HL
Sbjct:   35 KGQWTPEEDEVLCKAVERFQGKNWKKIA-ECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHL 133          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.776e-20
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT +ED ++I  ++  G   W  + +     R GK CR RW N+L P+IK+  ++++E+E I   H  LGN+W+ IA RLPGRTDN IKN W++ +++K
Sbjct:  134 LIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNG-RIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.874e-19
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   85 GLKKGPWTPEEDRILIAHIKKHGHPNWRALP-KQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAAVLKQNQK 429
            G+ KGPW  EED  L+  + K G   W ++  K  G  R GK CR RW N+L P++++ N++ EE++ II+ H  LGN+W+AI+  L GR  N IKN W++ L KK     K   K
Sbjct:  274 GIVKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPG--RIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKKIGGDSKSLNK 387          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   46 INKMGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            + K GR+         KG WT EED  L + +  HG   W+ +      LR G+ CR RW N L P IKR  ++ EE+  I++ H   GN+W+ I+  LPGRT+  IKN W++ +K+K
Sbjct:  741 LKKSGRSKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLL-CLRNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRK 857          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 396
            L KG WT +ED  +I  +K +G   W  +       R GK CR RW N+L P+IK+  +S EE++ I + H + GN+W+ IA  LPGRTDN IKN W++ +K+
Sbjct:  199 LVKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKG-RMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR 300          

HSP 2 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:   94 KGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 390
            KG WT EED+ILI  +  H   NW+ + +     R    C  R+   L P++ +G ++K+E++ +I L    G  +WS IA  L GR   + +  WH HL
Sbjct:  149 KGKWTSEEDQILIKAVNLHNQKNWKKIAEHFP-DRTDVQCHHRYQKVLHPNLVKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKGRMGKQCRERWHNHL 247          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  103 WTPEEDRILIAHIKKHGHPNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            W PEED IL+A+++++G   W  + ++    L R  KSC  RW NYLRP IK+G+ + +E+  +I L    GN+W  IAA +PGRT   +   W    +K+
Sbjct:   12 WRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 112          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  103 WTPEEDRILIAHIKKHGHPNWRALPKQ--AGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            W PEED +L A+++++G   W  + ++    L R  KSC  RW NYLRP IK+G+ ++EE+  +I L    GN+W  IAA +PGRT   +   W    +K+
Sbjct:    7 WRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  103 WTPEEDRILIAHIKKHGHPNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAAVLKQNQK 429
            W+ EED +L A++++ G   W  + ++    L R  KSC  RW NYL+P IK+G+ ++EE+  +I L +  GN+W  IAA +PGRT   +   W    +K+     + N++
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKR 117          
The following BLAST results are available for this feature:
BLAST of CX296572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB_MOUSE5.269e-2246.15Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYBA_CHICK1.174e-2145.19Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MB3R1_ARATH2.214e-2040.83Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYB_DROME3.776e-2044.23Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYBQ_DICDI1.874e-1942.24Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYBAA_DICDI2.706e-1838.98Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYBA_DICDI1.028e-1743.69Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
RS2_ORYSJ1.485e-1639.60Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE1.485e-1639.60Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
AS1_ARATH9.625e-1635.14Transcription factor AS1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC05146C04SK FerrChloL1 Citrus clementina cDNA clone C05146C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296572 ID=CX296572; Name=CX296572; organism=Citrus clementina; type=EST; length=741bp
CCGGGCTGCAGATTCGGCCGAGGAGTACTCCACTACTTTGAAAGAATTAA
CAAGATGGGGAGGGCTCCCTGCTGTGAGAAGATGGGATTGAAGAAGGGGC
CATGGACTCCTGAAGAAGATAGAATTTTAATCGCCCACATCAAAAAACAC
GGCCATCCCAATTGGCGTGCGTTACCAAAGCAAGCCGGTTTGTTGAGATG
TGGAAAGAGTTGCAGACTCCGATGGATAAATTACTTGAGGCCTGATATTA
AGAGGGGAAACTTCAGCAAAGAAGAAGAGGAAACTATCATCAACTTGCAT
GACATGTTGGGGAATAGGTGGTCAGCTATCGCAGCAAGGTTACCAGGAAG
GACAGATAATGAGATTAAAAACGTGTGGCACACGCACTTGAAGAAGAAAG
CAGCAGCAGTACTGAAGCAAAACCAGAAGGCCAATACTAATACTAATAAT
AATAATAATTCGGATGATCACAAACAAAACTCTAAAGCAACAACAGCTCA
TGATCATCAGTCTGCAGAATCTGCAATGTCTCCCCAGGCATCATCTTCCA
GTGATGAGCTCTCCTCGGTCACTACTGGAGAAACAAATAATAATAATAAT
AGTGATCGGTACTGCATGGATAAGTATGTGAAAGGTGATCATGAGCAAAA
TGTTGACTCGTTTGAAAGTTTTCCTGTGATTGATGAAAGCTTCTGGACAG
ACACCAGCTTATCTGAAAATTTCAGCATTTGACATCAGATT
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