CX296593

Overview
NameCX296593
Unique NameCX296593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CX296593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_RAT3.099e-3195.71Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT3.099e-3195.71Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY3.099e-3195.71Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY3.099e-3195.71Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG3.099e-3195.71Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR3.099e-3195.71Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA3.099e-3195.71Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE3.099e-3195.71Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE3.099e-3195.71Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA3.099e-3195.71Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05146E05SK FerrChloL1 Citrus clementina cDNA clone C05146E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296593 ID=CX296593; Name=CX296593; organism=Citrus clementina; type=EST; length=525bp
GAGGCCTCGTGCCGAATTCGGCACGAGGTTTAAACTAGAGTTTTTTATTC
AAAAGCATAACTCGTTCAACAAACAACAACATATAAAAACAAAAGACCAT
ATTATCAATTATAACTAGTCTTCTTCAAGAAGACAAAGACAACATAAGGA
CCATCTTGAACAGAAAAGACATTGACACGGGGCGCAGTGAATCCCCCTCA
GAAACCACCACCTCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCT
GAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCG
AAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT
GGCTTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCG
TCTTCCCGGTCAATGTCTTAACAAAAATCTGCATGCCACCCCTCAGACGC
AAAACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGCGT
CCTTCCATCCTCCAGCTGCTTGCCA
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