CX296597

Overview
NameCX296597
Unique NameCX296597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
The following BLAST results are available for this feature:
BLAST of CX296597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_LUPAL2.053e-1670.91Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS2.053e-1670.91Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU2.053e-1670.91Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN2.053e-1670.91Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN2.053e-1670.91Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA2.053e-1670.91Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA2.053e-1670.91Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA2.053e-1670.91Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA2.053e-1670.91Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF2.053e-1670.91Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05146E11SK FerrChloL1 Citrus clementina cDNA clone C05146E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296597 ID=CX296597; Name=CX296597; organism=Citrus clementina; type=EST; length=406bp
ATTCGGGACGAGGGGAAAACCCTCACATTGGACGTTGAGAGTTCTGACAC
CCTTGACAATGAGGAGGCTCCCACCCAGGATAAGGAGGGGATTCCCCCAG
ACCAACAAATGGTGATCTTTGCTGGTCATGATGTTGAGGATGTACGGACT
CTTGCTGATTACAACCTCGAGAACGAGCCCCCTCTGCATCTTGGGCTCCG
TCCCCCTGGAGGTGTCTGAGTCTGATCATCTGGGGGTGGGCGTGTCTTAT
GTGCTCCGGCTTGTCGTGAATAGTGTTAGCTTGCTATTGGAGAAATGTCT
TAAATGACTATTTGAAGCTCATTTTGGATGAGGTAGATGAACTCTGCTTC
TAAGACATTGATATGGTCCCACTAACGTCCCCTTGTATTATCTAAGAATC
TTTTTC
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