CX296597

Overview
NameCX296597
Unique NameCX296597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN ++  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT+DN +   QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TLDVE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT++N ++  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.270e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+ L+VESSDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.270e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT++N +   QDKEGIPPDQQ +IFAG  +ED RTLADYN++ E
Sbjct:   10 GKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-15
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE+SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-15
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE+SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.873e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VESSDT++N +   QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
The following BLAST results are available for this feature:
BLAST of CX296597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_CANAL1.019e-1567.27Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_NEUCR1.738e-1567.27Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_EIMBO1.738e-1567.27Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_ACECL1.738e-1567.27Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR2.270e-1567.27Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA2.270e-1567.27Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY2.965e-1565.45Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL2.965e-1565.45Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_AGLNE3.873e-1565.45Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA5.058e-1565.45Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05146E11SK FerrChloL1 Citrus clementina cDNA clone C05146E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296597 ID=CX296597; Name=CX296597; organism=Citrus clementina; type=EST; length=406bp
ATTCGGGACGAGGGGAAAACCCTCACATTGGACGTTGAGAGTTCTGACAC
CCTTGACAATGAGGAGGCTCCCACCCAGGATAAGGAGGGGATTCCCCCAG
ACCAACAAATGGTGATCTTTGCTGGTCATGATGTTGAGGATGTACGGACT
CTTGCTGATTACAACCTCGAGAACGAGCCCCCTCTGCATCTTGGGCTCCG
TCCCCCTGGAGGTGTCTGAGTCTGATCATCTGGGGGTGGGCGTGTCTTAT
GTGCTCCGGCTTGTCGTGAATAGTGTTAGCTTGCTATTGGAGAAATGTCT
TAAATGACTATTTGAAGCTCATTTTGGATGAGGTAGATGAACTCTGCTTC
TAAGACATTGATATGGTCCCACTAACGTCCCCTTGTATTATCTAAGAATC
TTTTTC
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