CX296597

Overview
NameCX296597
Unique NameCX296597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.606e-15
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TLDVE SD++DN +   QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.472e-14
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+ L+VE+SDT++N +A  QDKEGIPPDQQ +IFAG  +E+ RTLADYN++ E
Sbjct:   10 GKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.472e-14
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SD+++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.472e-14
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SD+++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.472e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SD ++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64          
The following BLAST results are available for this feature:
BLAST of CX296597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_CERCA5.058e-1565.45Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO5.058e-1565.45Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA5.058e-1565.45Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR5.058e-1565.45Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN5.058e-1565.45Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_PHYIN6.606e-1565.45Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_TRYBB1.472e-1463.64Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU1.472e-1463.64Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU1.472e-1463.64Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI1.472e-1463.64Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05146E11SK FerrChloL1 Citrus clementina cDNA clone C05146E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296597 ID=CX296597; Name=CX296597; organism=Citrus clementina; type=EST; length=406bp
ATTCGGGACGAGGGGAAAACCCTCACATTGGACGTTGAGAGTTCTGACAC
CCTTGACAATGAGGAGGCTCCCACCCAGGATAAGGAGGGGATTCCCCCAG
ACCAACAAATGGTGATCTTTGCTGGTCATGATGTTGAGGATGTACGGACT
CTTGCTGATTACAACCTCGAGAACGAGCCCCCTCTGCATCTTGGGCTCCG
TCCCCCTGGAGGTGTCTGAGTCTGATCATCTGGGGGTGGGCGTGTCTTAT
GTGCTCCGGCTTGTCGTGAATAGTGTTAGCTTGCTATTGGAGAAATGTCT
TAAATGACTATTTGAAGCTCATTTTGGATGAGGTAGATGAACTCTGCTTC
TAAGACATTGATATGGTCCCACTAACGTCCCCTTGTATTATCTAAGAATC
TTTTTC
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