CX296599

Overview
NameCX296599
Unique NameCX296599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 8.065e-69
Identity = 135/182 (74.18%), Postives = 149/182 (81.87%), Query Frame = 1
Query:  133 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNA
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 255.758 bits (652), Expect = 1.521e-67
Identity = 134/186 (72.04%), Postives = 148/186 (79.57%), Query Frame = 1
Query:  133 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAG LESGNA
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNA 195          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 7.549e-67
Identity = 129/180 (71.67%), Postives = 145/180 (80.56%), Query Frame = 1
Query:  133 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGN 663
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGN
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 186          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.205e-64
Identity = 127/181 (70.17%), Postives = 144/181 (79.56%), Query Frame = 1
Query:  133 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNA
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 189          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.685e-64
Identity = 123/190 (64.74%), Postives = 145/190 (76.32%), Query Frame = 1
Query:  100 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAG LESGNA
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNA 197          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.098e-41
Identity = 88/161 (54.66%), Postives = 110/161 (68.32%), Query Frame = 1
Query:  193 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAG LESGNA
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNA 172          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 69/127 (54.33%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  286 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMMSAG LESGNA
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGNA 75          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  463 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S G LES +A
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDA 71          
BLAST of CX296599 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  463 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNA 666
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S G LES +A
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDA 71          
The following BLAST results are available for this feature:
BLAST of CX296599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ8.065e-6974.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.521e-6772.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU7.549e-6771.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.205e-6470.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.685e-6464.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.098e-4154.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.299e-2354.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC9.042e-2064.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.181e-1964.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05146F02SK FerrChloL1 Citrus clementina cDNA clone C05146F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296599 ID=CX296599; Name=CX296599; organism=Citrus clementina; type=EST; length=666bp
GATTCGGCCGAGGGCATTGCTTCGCTTTCCTTTGCCTGCATTACAGCGTG
ACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATGG
CTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTC
CCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGAT
CCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCG
ATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACGAC
GAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGACTC
TCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTT
CTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACG
ATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCA
CATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCT
TGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTT
GTTTTCGCCAAGATGGGCATCAACCCAATTATGATGAGTGCCGGAAGATT
GGAAAGTGGCAATGCT
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