CX296621

Overview
NameCX296621
Unique NameCX296621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296621 vs. ExPASy Swiss-Prot
Match: ADCL1_MOUSE (Neutral cholesterol ester hydrolase 1 OS=Mus musculus GN=Nceh1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 55/179 (30.73%), Postives = 81/179 (45.25%), Query Frame = 2 
Query:   65 PWKAWLSISTLSFAMQIC-FRRNMTVNRFL---------FNLYDRKSSPSTKNGVTSFDVSVDATRDLWFRLYSPTNTTATNLP-VIVYFHGGGFAILAANSKVYDDACRRLAVEVPAVVISVNYRRSPEHRCPSQYEDGIDALK-FIDSSFIDIENFPACADIKQCFLAGDSAGGNLA 565
            PWK  L  +T   A Q+     ++ +N  L         F     +SSP  K   T FD        +  R++  +      L   ++Y HGGG+A+ +A    YD  C  +A E+ AV++S+ YR  P+   P Q  D I A K F+    +D        D  +  ++GDSAGGNLA
Sbjct:   30 PWKLMLLDATFRGAQQVSNLIHSLGLNHHLIALNFIITSFGKQSARSSPKVKVTDTDFD-------GVEVRVFEGSPKPEEPLRRSVIYIHGGGWALASAKISYYDQLCTTMAEELNAVIVSIEYRLVPQVYFPEQIHDVIRATKYFLQPEVLDKYK----VDPGRVGISGDSAGGNLA 197
The following BLAST results are available for this feature:
BLAST of CX296621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ADCL1_MOUSE3.444e-1130.73Neutral cholesterol ester hydrolase 1 OS=Mus muscu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05146H11SK FerrChloL1 Citrus clementina cDNA clone C05146H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296621 ID=CX296621; Name=CX296621; organism=Citrus clementina; type=EST; length=667bp
GAGGCCTCGTGCCGAATTCGGCACGAGGATAATGTCCACGAATTCCAAAA
CTTCACCAAACCTCCCATGGAAGGCATGGCTCTCCATATCGACGCTCTCC
TTTGCCATGCAAATATGTTTCCGCCGCAACATGACTGTCAATCGTTTCCT
CTTTAACCTCTATGATCGCAAATCCTCTCCTTCAACCAAAAATGGCGTCA
CGAGCTTCGATGTCTCAGTCGACGCCACCCGGGATCTCTGGTTCCGCCTC
TACTCGCCCACCAACACGACTGCAACAAACTTGCCAGTCATCGTCTACTT
CCACGGCGGAGGATTTGCAATCCTTGCTGCCAATTCAAAAGTATACGATG
ATGCTTGTAGAAGGCTAGCTGTGGAAGTCCCGGCTGTCGTCATTTCCGTT
AACTATCGTCGTTCGCCGGAGCATCGGTGTCCAAGTCAATACGAAGATGG
GATTGATGCACTCAAATTCATTGACAGCAGCTTCATAGACATTGAAAACT
TTCCGGCTTGTGCTGATATCAAACAGTGTTTTCTTGCCGGAGATAGTGCC
GGAGGCAACTTGGCCCATAACGTGGCAGTTCTTGCTGATGGGTGTAATTT
TTCCAGGCTGAGACTTAATGGACTCATAGCGATACAGCCATTTTTCGGCG
GTGAAGAAAGGACTGAA
back to top