CX296634 | Citrus Genome Database

Overview


Name	CX296634
Unique Name	CX296634
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	714

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.007e-51
Identity = 105/233 (45.06%), Postives = 143/233 (61.37%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSH---EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDW--EEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPN--NIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDD+QY+WES+A GSF ++ DT  E LGRGT+I LHL+++  EYLEE +LKDL+KK+SEFI++PI LW                                            V     EW L+N  K +W+R P+E+T+EEYA FY SL  D+  ++ ++  HFS EG +EFKA+LFVP +AP DL+++    N  N+KLYVRRVFI D  ++L+P+YL F+ GIVDS+ LPL
Sbjct:  217 NDDKQYVWESKADGSFAISEDTWNEPLGRGTEIKLHLRDEAKEYLEEGKLKDLVKKYSEFINFPIYLWATKEVDVEVPADEEESNEEEESTTETTEEEETEDDEEKKPKTKTVKETTTEWELLNDMKAVWLRSPKEVTEEEYAKFYHSLAKDFGDDKPMSWSHFSAEGDVEFKALLFVPPKAPHDLYESYYNANKSNLKLYVRRVFISDEFDDLLPKYLSFLMGIVDSDTLPL 449

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.996e-51
Identity = 104/236 (44.07%), Postives = 143/236 (60.59%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVS------HEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDW--EEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPN--NIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDD QY+WES+A G F V+ DT  E LGRGT+I LHL+++  EYLEE +LK+L+K++SEFI++PISLW                                                    +EW L+N  K IW+R P+E+T+EEY  FY SL+ D+  E+ +A  HF+ EG +EFKA+L+VP +AP DL+++    N  N+KLYVRRVFI D  +EL+P+YL F+KG+VDS+ LPL
Sbjct:  216 NDDSQYVWESKANGKFAVSEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKRYSEFINFPISLWASKEVETEVPVEEDESADEETETTSTEEEKEEDAEEEDGEKKQKTKKVKETVYEWELLNDVKAIWLRSPKEVTEEEYTKFYHSLSKDFTDEKPMAWSHFNAEGDVEFKAVLYVPPKAPHDLYESYYNSNKANLKLYVRRVFISDEFDELLPKYLSFLKGLVDSDTLPL 451

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 6.107e-49
Identity = 88/107 (82.24%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWEEHLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 397

HSP 2 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 222

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 194.126 bits (492), Expect = 6.107e-49
Identity = 88/107 (82.24%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWEEHLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 397

HSP 2 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 222

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 397

HSP 2 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 222

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 397

HSP 2 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+  HLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVIPHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 222

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 397

HSP 2 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 222

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  290 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 396

HSP 2 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 222

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  280 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 386

HSP 2 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  144 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 211

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 397

HSP 2 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 222

The following BLAST results are available for this feature:

BLAST of CX296634 vs. ExPASy Swiss-Prot

BLAST of CX296634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384


Match Name	E-value	Identity	Description
ENPL_HORVU	1.007e-51	45.06	Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1	[more]
ENPL_ARATH	4.996e-51	44.07	Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD...	[more]
HS90A_RAT	6.107e-49	82.24	Heat shock protein HSP 90-alpha OS=Rattus norvegic...	[more]
HS90A_MOUSE	6.107e-49	82.24	Heat shock protein HSP 90-alpha OS=Mus musculus GN...	[more]
HS90A_PIG	1.361e-48	81.31	Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H...	[more]
HS90A_PANTR	1.361e-48	81.31	Heat shock protein HSP 90-alpha OS=Pan troglodytes...	[more]
HS90A_MACFA	1.361e-48	81.31	Heat shock protein HSP 90-alpha OS=Macaca fascicul...	[more]
HS90A_HUMAN	1.361e-48	81.31	Heat shock protein HSP 90-alpha OS=Homo sapiens GN...	[more]
HS90A_HORSE	1.361e-48	81.31	Heat shock protein HSP 90-alpha (Fragment) OS=Equu...	[more]
HS90A_BOVIN	1.361e-48	81.31	Heat shock protein HSP 90-alpha OS=Bos taurus GN=H...	[more]

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Properties


Property Name	Value
Genbank description	C05801B01SK FerrChloL1 Citrus clementina cDNA clone C05801B01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296634 ID=CX296634; Name=CX296634; organism=Citrus clementina; type=EST; length=714bp
TTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCCAACGATGATGAGCAG
TACATCTGGGAGTCTCAGGCCGGTGGATCATTCACTGTTACCAGGGACAC
TTCTGGTGAGCTTCTTGGCCGCGGTACAAAGATCACTCTCCACCTCAAGG
AAGACCAACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATTTGATTAAG
AAGCACTCTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGAC
CACTGAGAAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATG
AGGAGGGTAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAG
AAGAAGAAGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAA
GCAGAAACCCATTTGGATGAGGAAACCTGAGGAGATTACAAAAGAAGAGT
ATGCTGCCTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCT
GTGAAGCACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTT
TGTTCCCAAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCA
ATAATATCAAGCTCTACGTCCGCCGTGTCTTCATCATGGACAACTGTGAG
GAGTTGATCCCCGAATACCTTGGTTTTGTTAAGGGTATTGTTGATTCCGA
GGATCTCCCTCTTA