CX296634 | Citrus Genome Database

Overview


Name	CX296634
Unique Name	CX296634
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	714

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_CRIGR (Heat shock protein HSP 90-alpha OS=Cricetulus griseus GN=HSP90AA1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.777e-48
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWEEHLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEEL PEYL F++G+VDSEDLPL
Sbjct:  291 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELFPEYLNFIRGVVDSEDLPL 397

HSP 2 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKEDQ EY+EERR+K+++KKHS+FI YPI+L++
Sbjct:  155 NDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYMEERRIKEIVKKHSQFIGYPITLFV 222

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.321e-48
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+ RKK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  286 LNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFMRGVVDSEDLPL 392

HSP 2 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D +GE LGRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI L++
Sbjct:  154 NDDEQYAWESSAGGSFTVRLD-NGEPLGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIRLFV 221

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.152e-47
Identity = 84/107 (78.50%), Postives = 98/107 (91.59%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++I+ EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMDNCEELIPEYL F++G+VDSEDLPL
Sbjct:  281 LNKTKPIWTRNPDDISNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPL 387

HSP 2 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKEDQ EY+EE+R+K+++KKHS+FI YPI+L++
Sbjct:  149 NDDEQYAWESSAGGSFTVKVD-HGEPIGRGTKVILHLKEDQTEYIEEKRVKEVVKKHSQFIGYPITLYV 216

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMD+C+ELIPEYL F++G+VDSEDLPL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPL 388

HSP 2 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  150 NDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL 217

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMD+C+ELIPEYL F++G+VDSEDLPL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPL 388

HSP 2 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  150 NDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL 217

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMD+C+ELIPEYL F++G+VDSEDLPL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPL 388

HSP 2 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  150 NDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL 217

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMD+C+ELIPEYL F++G+VDSEDLPL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPL 388

HSP 2 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  150 NDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL 217

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMD+C+ELIPEYL F++G+VDSEDLPL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPL 388

HSP 2 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  150 NDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL 217

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMD+C+ELIPEYL F++G+VDSEDLPL
Sbjct:  283 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPL 389

HSP 2 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ L+LKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  150 NDDEQYAWESSAGGSFTVRTD-HGEPIGRGTKVILYLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYV 217

[Close]

BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 3

Query:  393 VNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            +NK KPIW R P++IT+EEY  FYKSLTNDWE+HLAVKHFSVEGQLEF+A+LF+P+RAPFDLF+ +KK NNIKLYVRRVFIMD+C+ELIPEYL F++G+VDSEDLPL
Sbjct:  282 LNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPL 388

HSP 2 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 3

Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWI 242
            NDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKEDQ EYLEERR+K+++KKHS+FI YPI+L++
Sbjct:  150 NDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL 217

The following BLAST results are available for this feature:

BLAST of CX296634 vs. ExPASy Swiss-Prot

BLAST of CX296634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384


Match Name	E-value	Identity	Description
HS90A_CRIGR	1.777e-48	81.31	Heat shock protein HSP 90-alpha OS=Cricetulus gris...	[more]
HS90A_CHICK	2.321e-48	81.31	Heat shock protein HSP 90-alpha OS=Gallus gallus G...	[more]
HS90B_DANRE	1.152e-47	78.50	Heat shock protein HSP 90-beta OS=Danio rerio GN=h...	[more]
HS90B_RAT	2.566e-47	77.57	Heat shock protein HSP 90-beta OS=Rattus norvegicu...	[more]
HS90B_PONAB	2.566e-47	77.57	Heat shock protein HSP 90-beta OS=Pongo abelii GN=...	[more]
HS90B_MACFA	2.566e-47	77.57	Heat shock protein HSP 90-beta OS=Macaca fascicula...	[more]
HS90B_HUMAN	2.566e-47	77.57	Heat shock protein HSP 90-beta OS=Homo sapiens GN=...	[more]
HS90B_HORSE	2.566e-47	77.57	Heat shock protein HSP 90-beta OS=Equus caballus G...	[more]
HS90B_CHICK	2.566e-47	77.57	Heat shock cognate protein HSP 90-beta OS=Gallus g...	[more]
HS90B_BOVIN	2.566e-47	77.57	Heat shock protein HSP 90-beta OS=Bos taurus GN=HS...	[more]

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Properties


Property Name	Value
Genbank description	C05801B01SK FerrChloL1 Citrus clementina cDNA clone C05801B01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296634 ID=CX296634; Name=CX296634; organism=Citrus clementina; type=EST; length=714bp
TTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCCAACGATGATGAGCAG
TACATCTGGGAGTCTCAGGCCGGTGGATCATTCACTGTTACCAGGGACAC
TTCTGGTGAGCTTCTTGGCCGCGGTACAAAGATCACTCTCCACCTCAAGG
AAGACCAACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATTTGATTAAG
AAGCACTCTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGAC
CACTGAGAAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATG
AGGAGGGTAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAG
AAGAAGAAGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAA
GCAGAAACCCATTTGGATGAGGAAACCTGAGGAGATTACAAAAGAAGAGT
ATGCTGCCTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCT
GTGAAGCACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTT
TGTTCCCAAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCA
ATAATATCAAGCTCTACGTCCGCCGTGTCTTCATCATGGACAACTGTGAG
GAGTTGATCCCCGAATACCTTGGTTTTGTTAAGGGTATTGTTGATTCCGA
GGATCTCCCTCTTA