CX296750

Overview
NameCX296750
Unique NameCX296750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_METFK (Chaperone protein hscA homolog OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=hscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 57/175 (32.57%), Postives = 90/175 (51.43%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            I + KR +GR   D  +  +  LP+  Q VD+   P +  +   A   + P E+ A  L  L+A AE  L   +   V+T+P  F   Q    + A  +AG++VLRL+ EPTA A+ Y           L + SE I V++++G G  DV++     GV ++ + +G SA+GG+D
Sbjct:   83 IASAKRFLGRGLND--IGDTSHLPY--QFVDV---PGMVQIETRAGIKS-PVEISAEILKSLKARAEQALGGELTGAVITVPAYFDDAQRQATKDAARIAGINVLRLLNEPTAAAIAY----------GLDNASEGIYVVYDLGGGTFDVSILRLTKGVFEVLSTNGDSALGGDD 239          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_LARHH (Chaperone protein hscA homolog OS=Laribacter hongkongensis (strain HLHK9) GN=hscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 58/175 (33.14%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            + ++KR +GR  +D    A+    F    VD    P +  LV      + P EV A  L  L+A AE+ L   +   V+T+P  F   Q    + A  +AGL+VLRL+ EPTA A+ Y           L + +E   V++++G G  DV++     GV ++ A SG SA+GG+D
Sbjct:   83 VVSVKRFMGRGLSDLADAAATPYRF----VDA---PGMVRLVTRQGEKS-PVEVSADILRALKARAESSLGGELTGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAY----------GLDNAAEGTYVVYDLGGGTFDVSILRLTRGVFEVLATSGDSALGGDD 239          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_AZOSE (Chaperone protein hscA homolog OS=Azoarcus sp. (strain EbN1) GN=hscA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            TP E+ A  L  L A AE  L  P+   V+T+P  F   Q    + A  +AGL+VLRL+ EPTA A+ Y           L + SE +  I+++G G  D+++   + G+ ++ A +G +A+GG+D
Sbjct:  124 TPVEISAEILKTLGARAEASLGGPLTGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAY----------GLDNASEGVYAIYDLGGGTFDLSILKLSRGIFEVLATNGDAALGGDD 239          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_PROA2 (Chaperone protein dnaK OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 53/180 (29.44%), Postives = 91/180 (50.56%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F++KR +GR   D V +  K  P+ V  ++   R  I        ++ +P+E+ A+ L +++  AE  L   +   V+T+P  F+  Q    + A  +AGL V R++ EPTA AL Y               +EK+AV F++G G  D+++     GV ++K+  G   +GG+D  Q +
Sbjct:   66 VFSIKRFMGR-KFDEVPNEKKIAPYKVVNINGEARVEIDD------KNYSPQEISAMILQKMKQTAEDFLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDKKKE--------NEKVAV-FDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQTI 229          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_CARHZ (Chaperone protein dnaK OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            TP+E+ A+ L +L+  AE  L   I   V+T+P  F+  Q    + A  +AGL VLR++ EPTA AL Y           L    E+  +++++G G  DV++     GV ++KA +G + +GG+D  Q +
Sbjct:   87 TPQEISAMILQKLKQDAEAYLGEKIEKAVITVPAYFTDAQRQATKDAGRIAGLEVLRIINEPTAAALAY----------GLDKEGEQTILVYDLGGGTFDVSILEIGDGVFEVKATAGNNRLGGDDFDQRI 207          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_CALS8 (Chaperone protein dnaK OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            +PEE+ A+ L++L+A AE  L   I   V+T+P  F+  Q    + A  +AGL VLR++ EPTA AL Y              G +KI +++++G G  DV++     GV ++ A SG + +GG+D  Q +
Sbjct:   87 SPEEISAMILMKLKADAEAYLGEKITQAVITVPAYFTDSQRQATKNAGRIAGLEVLRIINEPTAAALAYGLDK---------EGHQKI-MVYDLGGGTFDVSILEIGEGVIEVLATSGNNRLGGDDFDQRI 207          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_BACV8 (Chaperone protein dnaK OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 56/178 (31.46%), Postives = 91/178 (51.12%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQ 575
            IF++KR +G    D V   +  +P+ V   D          V+   R  TP+E+ A+ L +++  AE  L + +   V+T+P  FS  Q    + A  +AGL V R++ EPTA AL Y        H+++     KIAV F++G G  D+++    GGV ++ + +G   +GG+D  Q
Sbjct:   66 IFSIKRFMGET-WDQVQKETARVPYKVVKGDNNT-----PRVDIDGRLYTPQEISAMILQKMKKTAEDYLGQEVTEAVITVPAYFSDSQRQATKEAGQIAGLEVKRIVNEPTAAALAYG---LDKAHKDM-----KIAV-FDLGGGTFDISILEFGGGVFEVLSTNGDTHLGGDDFDQ 228          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP72_PARLI (Heat shock 70 kDa protein II (Fragment) OS=Paracentrotus lividus GN=HSP70II PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 54/178 (30.34%), Postives = 93/178 (52.25%), Query Frame = 3
Query:   57 KRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQL-KRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALS-GSAIGGEDLLQNM 581
            KRLIGR  +D  V A  K  PF V  ++ G RP I        ++   EE+ ++ L++++  AE  L K  + + V+T+P  F+  Q    +    ++G+++LR++ EPTA A+ Y          +   G+E+  +IF++  G  DV+V     G+ ++K+ S  + +GGED    M
Sbjct:   70 KRLIGRNFSDTNVKADMKHWPFTV--IEEGGRPKIKIEFKGESKTFYAEEISSMVLLKMKETAEAYLGKESVTDAVVTVPAYFNDSQRQATKECGVISGMNILRIINEPTAAAIAYGL--------DKKGGAERNVLIFDLVGGTFDVSVLTIEEGIFEVKSTSRDTHLGGEDFDNRM 237          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP13_RAT (Heat shock 70 kDa protein 13 OS=Rattus norvegicus GN=Hspa13 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKS-LPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            I++ KR IG++ T   + A     PF V   + G+  F  ++ +N     +PE V +  L++L+ MAE  L  P+ N V+++P  F   Q     +A  +AGL +LR++ EPTA A+ Y        +           ++ ++G G  DV++    GG+   +A+SG + +GG+D  Q +
Sbjct:   96 IYDAKRFIGKIFTPEELEAEIGRYPFKVLHKN-GMAEF--SVTSNETIIVSPEYVGSRLLLKLKEMAEKYLGMPVANAVISVPAEFDLQQRNSTIQAANLAGLKILRVINEPTAAAMAYGLHKVDVFY----------VLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRL 263          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_PSEU5 (Chaperone protein hscA homolog OS=Pseudomonas stutzeri (strain A1501) GN=hscA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            I ++KRL+GR   D V    + LP+  +  +  + PFI  +      + +P E+ A  L  LR  AE  L   +   V+T+P  F   Q    + A  +AGL+VLRL+ EPTA A+ Y           L   +E +  I+++G G  D+++     GV ++ A  G +A+GG+D
Sbjct:   82 ISSVKRLMGRGLAD-VKQLGEQLPYRFRQAESQM-PFIETVQG----AKSPVEISAEILRALRERAEAALGGELVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY----------GLDRQAEGVVAIYDLGGGTFDISILRLTKGVFEVLATGGDTALGGDD 240          
The following BLAST results are available for this feature:
BLAST of CX296750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSCA_METFK8.121e-1332.57Chaperone protein hscA homolog OS=Methylobacillus ... [more]
HSCA_LARHH8.121e-1333.14Chaperone protein hscA homolog OS=Laribacter hongk... [more]
HSCA_AZOSE8.121e-1334.92Chaperone protein hscA homolog OS=Azoarcus sp. (st... [more]
DNAK_PROA28.121e-1329.44Chaperone protein dnaK OS=Prosthecochloris aestuar... [more]
DNAK_CARHZ8.121e-1333.59Chaperone protein dnaK OS=Carboxydothermus hydroge... [more]
DNAK_CALS88.121e-1335.11Chaperone protein dnaK OS=Caldicellulosiruptor sac... [more]
DNAK_BACV88.121e-1331.46Chaperone protein dnaK OS=Bacteroides vulgatus (st... [more]
HSP72_PARLI1.061e-1230.34Heat shock 70 kDa protein II (Fragment) OS=Paracen... [more]
HSP13_RAT1.061e-1229.28Heat shock 70 kDa protein 13 OS=Rattus norvegicus ... [more]
HSCA_PSEU51.061e-1231.43Chaperone protein hscA homolog OS=Pseudomonas stut... [more]

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Properties
Property NameValue
Genbank descriptionC05802D04SK FerrChloL1 Citrus clementina cDNA clone C05802D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296750 ID=CX296750; Name=CX296750; organism=Citrus clementina; type=EST; length=582bp
GAGGCTCACTCTCCCATGAACATGAAATGTTATCTGGAGCTGCTATTTTC
AACATGAAACGCTTAATCGGCAGAGTTGACACCGATCCTGTGGTCCATGC
AAGCAAAAGCTTACCGTTTTTGGTCCAAACCGTGGACATTGGTGTTCGTC
CATTTATTGCAGCCTTAGTGAACAATGCGTGGAGATCCACCACTCCCGAA
GAAGTCCTGGCAATATTTTTGGTGGAACTAAGAGCCATGGCTGAAACTCA
GTTGAAACGCCCAATAAGAAATGTTGTTCTAACCATTCCAGTTTCATTCA
GTCGTTTCCAACTGACACGCATTGAACGAGCATGTGCTATGGCTGGCCTT
CATGTCCTCAGACTTATGCCTGAACCAACTGCTGTAGCTCTATTGTATGC
TCAGCAGCAGCAACAGAGTGTGCATGAGAATTTGGGCAGTGGAAGTGAGA
AGATTGCGGTCATTTTCAATATGGGTGCTGGGTACTGTGATGTCACTGTG
AGTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCTTTATCAGGAAGTGC
TATTGGAGGAGAGGATTTACTTCAGAATATGA
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