CX296763

Overview
NameCX296763
Unique NameCX296763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = -2
Query:  334 QNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDI 690
            Q +   Y EP+      Q +  +   +    +    RPFGVSLLIAG DE+ P L+ +DPSG ++   A A+          L+++YN+DL L++A   A+  LK+  E ++T  N+++
Sbjct:   95 QQYFLVYQEPIPTGQLVQRVASVMQEY---TQSGGVRPFGVSLLIAGWDEDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEENIEV 210          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 47/151 (31.13%), Postives = 80/151 (52.98%), Query Frame = -2
Query:  325 IDEHIGCAMSD*LL---MLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 768
            ID+HI  A S  +    +LV     + E Q +R +YGEP+ +    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG +++  A AI           ++ Y+ DL ++ A  +A+  L + +EE  +P ++++A +
Sbjct:   72 IDDHIAAAPSGIIADARVLVD--RARLEAQVYRLTYGEPVPLTVLVKKICDLKQAH---TQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEP-SPESIEVAYI 215          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 51/177 (28.81%), Postives = 87/177 (49.15%), Query Frame = -2
Query:  280 IDEHIGCAMS----D*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSIL----KQVMEEK-----VTPNNVDIARVAPTYHLYTPSEVEAV 768
            ID+HIG A +    D  +++ +    +  T  HR  YGEP  VE   + + D+   +    +    RPFGV+L+ AG + +G + +Y TDP G ++   A AI           ++ Y  D++L+EA  +AL IL    ++ +E+K       P+ V++A +     ++T    E V
Sbjct:   74 IDDHIGVAFAGMGGDGRILIDYA---RVFTVRHRLLYGEPPPVELVAKVVADVKQAY---TQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAIIRKTVEDKEKAIATLPDQVELAYITVKERMFTKMTKEQV 244          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = -2
Query:  268 ETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSI--LKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 696
            E Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G P LY TDPSGT+    A AI          L++ Y +D    + E I L+I  L +V++       + I R      +++  E+E  ++ +
Sbjct:   92 ECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELEVSEI 234          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = -2
Query:  268 ETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSI--LKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 696
            E Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G S LY TDPSGT+    A AI          L++ Y +D    ++E I L+I  L +V++       + I R      +++  EVE  +  +
Sbjct:   98 ECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEI 240          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = -2
Query:  268 IDEHIGCAMSD*L---LMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV---APTYHLYTPSEVEAVINRL 768
            ID HIG A S  +     LV     + E+Q +R SY E + VE  ++ LCD    +    +   +RP+G +LLIAG  +    L+ TDPSGT  +  A  I           +E+YN + ++++A  + L  L    E K   N V+I  V    P +   +  EV + + ++
Sbjct:   71 IDNHIGVASSGLVGDARSLVD--RARVESQVNRVSYDEQIDVEMLSKKLCDHMQTY---TQFGGARPYGTALLIAGISDGQFRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLKALHAATEGKFDVNTVEIGVVNNDTPAFRKMSRQEVASFVEQI 238          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = -2
Query:  268 IDEHIGCAMSD*LL---MLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 768
            ID+HIG A S  +     LV     + E Q +R SY E + VE  ++ +CD    +    +    RP+G +LLIAG D+N P L+ TDPSG   +  A AI           +  Y +D+ +  A  + +  L +  E K     +++  V+     +    P EVE  ++++
Sbjct:   71 IDDHIGAATSGLVADARSLVD--RARVEAQVNRVSYDELIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYVHQI 238          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 53/176 (30.11%), Postives = 85/176 (48.30%), Query Frame = -2
Query:  277 IDEHIGCAM----SD*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAI-XXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVME-EKVTPNNVDIARVAP-----TYHLYTPSEVEAVI 768
            IDEH+ CA+    SD  +++ +    +  +Q   + Y EPM VE     +CD    +    +    RPFGVS L AG D + G  LY +DPSG F    A +I           L+  Y  D++L+EA  +AL +L + M+   +    ++ +          YH++T +E++A I
Sbjct:   69 IDEHVVCAVAGITSDANILINYA---RLSSQRFFYQYQEPMPVEQLVSQICDTKQGY---TQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSEKLEFSYFTKQGDNVVYHIFTAAELDAFI 238          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.468e-11
Identity = 49/172 (28.49%), Postives = 85/172 (49.42%), Query Frame = -2
Query:  268 IDEHIGCAMSD*LL-MLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL-LIAGSDENGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 768
            I + IGCAM+  +          + E  N R+ YG  M V+   + + D+   + +  E    RP G S+ LIA  +E GPS+Y TDP+G F    A ++          L+++Y  +L+ ++A  +A+S L  V+     PN ++I  V+   PT+ +    E+E  + ++
Sbjct:   72 ITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAE---MRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKI 240          
BLAST of CX296763 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 41/152 (26.97%), Postives = 76/152 (50.00%), Query Frame = -2
Query:  334 IDEHIGCAM----SD*LLMLVHC*TCKGETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIXXXXXXXXXSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 768
            +D+H+GC+     SD  +++ +    + +   HR  Y EP+ ++  T+ + D+   +    +    RPFGV+L+I G D    P L  T+PSG F    A AI           ++ Y +DL +Q+   + +  L   ++  EK+ P+N+++
Sbjct:   72 LDDHVGCSFAGLASDGRILIDYA---RSQALQHRLIYDEPINIDYLTKLVSDVKQMY---TQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEV 217          
The following BLAST results are available for this feature:
BLAST of CX296763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PSA2_CARAU1.176e-1132.77Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSMA_THEON1.536e-1131.13Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_AERPE1.536e-1128.81Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA7L_MOUSE1.536e-1130.14Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7L_HUMAN2.005e-1130.82Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSMA_METPE2.619e-1130.06Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_METMA3.421e-1128.90Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSA4_DICDI3.421e-1130.11Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA6_DROME4.468e-1128.49Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSMA_SULTO5.835e-1126.97Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]

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Properties
Property NameValue
Genbank descriptionC05802E08SK FerrChloL1 Citrus clementina cDNA clone C05802E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296763 ID=CX296763; Name=CX296763; organism=Citrus clementina; type=EST; length=769bp
ACGAGGCTATCTTCCATTAGGTTCATATCGTTCATACAACTGAGAAGTAC
TTCAGTTCTGCACGGACACAGATTTCGGGGGTATGATAGGCAGCTCAAAC
CCAGCACCAAAACAGAAAGGTTTAAATGGGTGCAATCCCAATCATAAACA
AATATAATTGTTTCCCCTAACAAACAAACAACCAAGTGCACTTGCACTGC
AAAGAACTGAAGAAACACCACTAAAGCCAGGGAAGAATTTTTAAAGATTA
TTTTCTCCAGATACTCATAGGCGATTGATGACAGCCTCCACCTCAGAAGG
GGTATAGAGATGATACGTTGGAGCTACCCTTGCAATATCAACATTGTTTG
GAGTGACCTTTTCTTCCATAACTTGCTTCAAAATTGATAGAGCAATTGTC
TCTGCTTCCTGAAGGGTTAAATCCTTGTTATATTGCTCTTGGAGAGAACT
GTCAGCTCCTTATGAACCTGAACCAATAGCCTTCGCATTGCATTGCCAGA
ATGTGCCAGATGGATCTGTATAGTACAGGCTAGGTCCATTCTCGTCAGAT
CCAGCAATAAGAAGGGATACTCCAAATGGTCGAGACATGGATTCTTCATC
GCCTTCACCAAAGCGTAGCGCCAGGTCACAGAGTGCTTGTGTAGTAGATT
CTACGGTCATTGGCTCACCATATGAGAATCTATGATTCTGAGTTTCACCC
TTGCATGTTCAACAGTGTACGAGCATCAGCAATCAATCACTCATAGCACA
TCCTATATGCTCATCAATT
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