CX296771

Overview
NameCX296771
Unique NameCX296771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  443 LAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK--------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 724
            +A+ L++DH+PS E EK+RI   GG+VD      RV G+LA+SRA+GD   K        Q + A P+  +  I  + EF++LA DG+WD  ++Q+ I+  R
Sbjct:  149 IAKPLSADHKPSNEAEKARICAAGGFVDF----GRVNGNLALSRAIGDFEFKNSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVR 246          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            +++DH P    E+S IE  GG+V    G   RV G LAVSRA GD+ LK  + +EP+ K   +  + + L+LASDG+W  ++N+EA++IAR         +P  A K+L
Sbjct:  160 MSTDHEP--RTERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGDKGLKTHLSSEPDIKEATVDSQTDVLLLASDGIWKVMTNEEAMEIAR------RVKDPQKAAKEL 260          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = -1
Query:  443 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 712
            L   HRP R+DEK+RIE +GG+V      WRV G+LAVSRA+GD   K ++  E +     +    ++L+LA DG +D V +QE + + +
Sbjct:  288 LMEPHRPERQDEKARIEALGGFVSHMD-CWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQ 376          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C76_ORYSJ (Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica GN=Os11g0586100 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  449 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW-IIAEPE-TKIIRIKPEYEFLILASDGLWDKVSNQEAIDI 712
            LT DH P REDE+SR+E  GGYV    G  RV G LA+SRA+GD   K++ +I  PE T+   +     FLI +SDG+++K++ Q+  D+
Sbjct:  322 LTKDHHPDREDERSRVEAAGGYVLEWAGVHRVNGELALSRAIGDVPYKRYGVIPTPELTEWQSLSANDTFLIASSDGVFEKMTMQDVCDL 411          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQ---------WIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            L+ DH+P  + EK RI   GG++       RV GSL ++RA+GD  LKQ          + AEPE   +++  + EF++LA DG+WD +S+QE +D       + D+   +  C+KL
Sbjct:  193 LSKDHKPDLDAEKERILNAGGFIV----AGRVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAV--CEKL 303          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  389 RRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW--------IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 730
            R  A  ++ DH+PS   EK RIE  GGYV   +    + G L V+RA+GD H++          + AEPE  I  +  E EFLI+  DG+WD   +Q A+D AR   Q  +  +P+  CK+L
Sbjct:  196 RGKAIEMSRDHKPSCNREKVRIEASGGYVYDGY----LNGQLNVARAIGDWHMEGMKACDGLGPLSAEPEVMIRNLTEEDEFLIIGCDGIWDVFRSQNAVDFARRKLQ--EHNDPVTCCKEL 311          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  443 AEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGD---------RHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 721
            A AL++DH+P+  +E  RI   GG V    G+ RV   +AVSRA+GD         R  +Q +   PE +  ++  + EFL++A DG+WD ++NQ  +D  R
Sbjct:  182 AIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVR 283          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = -1
Query:  461 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQE 712
            L   H+P R+DEKSRIE +GG+V L    WRV G+LAVSRA+GD   K ++  E +     +    ++L+LA DG +D V + E
Sbjct:  284 LMEPHKPERQDEKSRIEALGGFVSLMD-CWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGLEDYLLLACDGFFDVVPHHE 366          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = -1
Query:  461 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQE 712
            L   H+P R+DEK+RIE +GG+V L    WRV G+LAVSRA+GD   K ++  E +     +    ++L+LA DG +D V + E
Sbjct:  285 LMEPHKPERQDEKARIEALGGFVSLMD-CWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHE 367          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  419 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEY-EFLILASDGLWDKVSNQEAIDIARPFCQSIDA 712
            L+ DH+ S  +E  R+  +GG +       R+ G LAV+RALGD +LK+ + A P T   RI   + EF I+A DGLWD VS+QEA+D  R F    +A
Sbjct:  205 LSYDHKGSDANESRRVTQLGGLMVQN----RINGVLAVTRALGDTYLKELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVRNFVSPREA 299          
The following BLAST results are available for this feature:
BLAST of CX296771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
PP2C3_SCHPO7.511e-1340.20Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
P2C09_ARATH7.511e-1340.37Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
PPM1F_HUMAN9.810e-1341.11Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]
P2C76_ORYSJ9.810e-1345.56Putative protein phosphatase 2C 76 OS=Oryza sativa... [more]
P2C70_ORYSJ9.810e-1335.90Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
P2C57_ORYSJ1.281e-1238.52Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
P2C42_ORYSJ1.281e-1237.25Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
PPM1F_RAT3.728e-1244.05Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]
PPM1F_MOUSE3.728e-1242.86Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
PP2C1_SCHPO4.869e-1243.43Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC05802F05SK FerrChloL1 Citrus clementina cDNA clone C05802F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296771 ID=CX296771; Name=CX296771; organism=Citrus clementina; type=EST; length=736bp
TGCCGAATTCGGCACGAGGATTGAATCCTTTTATTTGTATTTGCTTTGAA
CTTGTACACTAAGTTTATGCTTAATTATTATAATAGCTGATAAGTAATGT
TACACAAAGAATGAACTTATTTACAAATCAAAGAACAAAAAATTATCTAT
GACTGGTATCAATTCTCTTCTTCAATTGTAGGTGGAAATGTCCTCCCTAG
ATGATTGATTAAAAGCTACTTGGAATAATTCACCTAATGGTAACTAAGCA
AGAGAAATTTTATTCGGCCTCGGCGTTAGTTCAATTTTCTACTGTATGTT
GTTTTGGGATGATTCAAAGATAGCGCCCCAGTTGAATCAGCATCACACTA
ACATCATCAACTGAGCCCCGTGAAACAGAGAGATCTACAAGCTTCTTACA
CGCTAACATTGGTTCTGGTGCATCAATGCTTTGGCAAAAAGGGCGAGCAA
TGTCAATTGCTTCTTGATTACTGACCTTATCCCAGAGGCCATCAGATGCT
AAGATTAGGAACTCGTATTCGGGTTTGATTCGAATGATTTTAGTCTCTGG
CTCGGCTATGATCCATTGCTTAAGGTGCCGATCCCCAAGGGCTCTAGACA
CAGCTAGAGACCCCTGAACTCTCCATGTACCGTGACATAAATCAACATAG
CCGCCCATCGTCTCAATTCTGCTCTTTTCATCTTCCCTAGAGGGCCGGTG
GTCTGAAGTGAGTGCCTCGGCAAGCCTCCTCTGCTC
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