CX296777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PELPD (50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379) GN=rplQ PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26 Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393 R+L R T HR +M R MV+ L HE+I TT AKAKE+R +A+ M+ LGK G L + R AAAF+R V+ KLF+ +A RYK+RAGGYTR+++ R GDAAPM+ IE V+ Sbjct: 8 RRLGRKTSHREAMFRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAAAFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSIIELVE 117
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHORT (50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26 Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR + HR +M M + L+KHE+I+TT+ KAK++R +A+ ++ LGK G+L R+A A +R D V+ KLF L RYKDR GGY+R+L++ R GDAAPMA IE VDR Sbjct: 8 RKLNRTSSHRKAMFANMAASLLKHEQIKTTLPKAKDLRPIAEKLITLGKGGTLHDRRQAHAILRDDAVVAKLFAVLGPRYKDRQGGYSRILKAGFRYGDAAPMAVIELVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_OLICO (50S ribosomal protein L17 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A + +R D + KLF LA RYKDR GGYTR++++ R GD APMA IEFVDR Sbjct: 8 RKLNRTAEHRKAMFANMAASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAISELRDHDQVKKLFDALAARYKDRQGGYTRIIKAGFRYGDNAPMAVIEFVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DESOH (50S ribosomal protein L17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26 Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD--RANELRQSKP----AVPQPPPRAAMDPWTRSRLTKNFAPPKQEKSSDAE 528 KL R HR +M R MV+ L+KHE+I+TT AKAKE+RR AD+++ L K G L A R+ A VR +V+HKLF E A R+ R GGYTRL + R GDAAP+ IE V E ++ KP A P P P A P + P E+S+ A+ Sbjct: 9 KLGRTGSHRNAMFRNMVTSLLKHEKIQTTDAKAKELRRWADHVITLAKRGDLHARRQVMAIVREKNVVHKLFAEAAERFGSREGGYTRLTKIGARPGDAAPVTLIELVSLTETTEKKKKKPAKTAAKPAPTPSA---PAVEKEAAADTPAPAAEESAPAK 165
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESW (50S ribosomal protein L17 OS=Shewanella sp. (strain W3-18-1) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESR (50S ribosomal protein L17 OS=Shewanella sp. (strain MR-7) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESM (50S ribosomal protein L17 OS=Shewanella sp. (strain MR-4) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESA (50S ribosomal protein L17 OS=Shewanella sp. (strain ANA-3) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEPC (50S ribosomal protein L17 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplQ PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEON (50S ribosomal protein L17 OS=Shewanella oneidensis GN=rplQ PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118 The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bpback to top |