CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PELPD (50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379) GN=rplQ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393
            R+L R T HR +M R MV+ L  HE+I TT AKAKE+R +A+ M+ LGK G L + R AAAF+R   V+ KLF+ +A RYK+RAGGYTR+++   R GDAAPM+ IE V+
Sbjct:    8 RRLGRKTSHREAMFRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAAAFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSIIELVE 117          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHORT (50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR + HR +M   M + L+KHE+I+TT+ KAK++R +A+ ++ LGK G+L   R+A A +R D V+ KLF  L  RYKDR GGY+R+L++  R GDAAPMA IE VDR
Sbjct:    8 RKLNRTSSHRKAMFANMAASLLKHEQIKTTLPKAKDLRPIAEKLITLGKGGTLHDRRQAHAILRDDAVVAKLFAVLGPRYKDRQGGYSRILKAGFRYGDAAPMAVIELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_OLICO (50S ribosomal protein L17 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + +R  D + KLF  LA RYKDR GGYTR++++  R GD APMA IEFVDR
Sbjct:    8 RKLNRTAEHRKAMFANMAASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAISELRDHDQVKKLFDALAARYKDRQGGYTRIIKAGFRYGDNAPMAVIEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DESOH (50S ribosomal protein L17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD--RANELRQSKP----AVPQPPPRAAMDPWTRSRLTKNFAPPKQEKSSDAE 528
            KL R   HR +M R MV+ L+KHE+I+TT AKAKE+RR AD+++ L K G L A R+  A VR  +V+HKLF E A R+  R GGYTRL +   R GDAAP+  IE V      E ++ KP    A P P P A   P        +   P  E+S+ A+
Sbjct:    9 KLGRTGSHRNAMFRNMVTSLLKHEKIQTTDAKAKELRRWADHVITLAKRGDLHARRQVMAIVREKNVVHKLFAEAAERFGSREGGYTRLTKIGARPGDAAPVTLIELVSLTETTEKKKKKPAKTAAKPAPTPSA---PAVEKEAAADTPAPAAEESAPAK 165          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESW (50S ribosomal protein L17 OS=Shewanella sp. (strain W3-18-1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESR (50S ribosomal protein L17 OS=Shewanella sp. (strain MR-7) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESM (50S ribosomal protein L17 OS=Shewanella sp. (strain MR-4) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESA (50S ribosomal protein L17 OS=Shewanella sp. (strain ANA-3) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEPC (50S ribosomal protein L17 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEON (50S ribosomal protein L17 OS=Shewanella oneidensis GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_PELPD1.080e-2654.5550S ribosomal protein L17 OS=Pelobacter propionicu... [more]
RL17_RHORT1.410e-2653.1550S ribosomal protein L17 OS=Rhodospirillum rubrum... [more]
RL17_OLICO1.410e-2653.1550S ribosomal protein L17 OS=Oligotropha carboxido... [more]
RL17_DESOH1.410e-2644.3850S ribosomal protein L17 OS=Desulfococcus oleovor... [more]
RL17_SHESW2.405e-2654.0550S ribosomal protein L17 OS=Shewanella sp. (strai... [more]
RL17_SHESR2.405e-2654.0550S ribosomal protein L17 OS=Shewanella sp. (strai... [more]
RL17_SHESM2.405e-2654.0550S ribosomal protein L17 OS=Shewanella sp. (strai... [more]
RL17_SHESA2.405e-2654.0550S ribosomal protein L17 OS=Shewanella sp. (strai... [more]
RL17_SHEPC2.405e-2654.0550S ribosomal protein L17 OS=Shewanella putrefacie... [more]
RL17_SHEON2.405e-2654.0550S ribosomal protein L17 OS=Shewanella oneidensis... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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