CX296777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HELMI (50S ribosomal protein L17 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplQ PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26 Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +RK +RPT HR ++LR + + L+KH +I TT KAKE+RR+AD M+ LGK+G L A R+A AF++ + V+ LF E+A +Y R GGYTR+L++ R GDAAPM +E V Sbjct: 3 YRKFSRPTNHRRALLRNITTSLLKHGKIVTTEPKAKELRRIADKMITLGKQGDLHARRQALAFIQEESVVTHLFKEIAPKYATRQGGYTRVLKAGFRRGDAAPMCIVELV 112
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOUR (50S ribosomal protein L17 OS=Geobacter uraniireducens (strain Rf4) GN=rplQ PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26 Identity = 61/134 (45.52%), Postives = 88/134 (65.67%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR----ANELRQSKPAVPQPPPRAA 453 ++L R T HR++M R MV+ + HERI TT KAKE+R +A+ M+ LGK+G L A R+AA+++R V+ KLFT +A RY +RAGGYTR+++ IR GD AP++ IE V+ + K V + P+AA Sbjct: 8 KRLGRTTSHRIAMYRNMVTSFLNHERITTTDVKAKELRSIAEKMITLGKKGDLHAMRQAASYIRDKKVVTKLFTAIAPRYAERAGGYTRIIKLGIRPGDNAPLSVIELVEEELNAPKGTAKKKADVKKTAPKAA 141
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DIAST (50S ribosomal protein L17 OS=Diaphorobacter sp. (strain TPSY) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26 Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 RKLNR + HR++ML+ M++ L++HE I+TT+ KAKE+RR+ + M+ L KE S+ R A +R D + KLF +L R+K R GGYTR+L+ RVGD APMAY+E VDRA Sbjct: 8 RKLNRTSSHRLAMLQNMMNSLIEHEAIKTTLPKAKELRRVIEPMITLAKEDSVANRRLAFNRLRDRDSVTKLFNDLGPRFKTRPGGYTRILKMGFRVGDNAPMAYVELVDRA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ACISJ (50S ribosomal protein L17 OS=Acidovorax sp. (strain JS42) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26 Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 RKLNR + HR++ML+ M++ L++HE I+TT+ KAKE+RR+ + M+ L KE S+ R A +R D + KLF +L R+K R GGYTR+L+ RVGD APMAY+E VDRA Sbjct: 8 RKLNRTSSHRLAMLQNMMNSLIEHEAIKTTLPKAKELRRVIEPMITLAKEDSVANRRLAFNRLRDRDSVTKLFNDLGPRFKTRPGGYTRILKMGFRVGDNAPMAYVELVDRA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEWM (50S ribosomal protein L17 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLF EL RY++R GGYTR+L+ +R GD APMAYIE V R + Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAYIELVGRPED 121
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB9 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS195) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB8 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS185) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB5 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB2 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS223) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_NITWN (50S ribosomal protein L17 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26 Identity = 60/116 (51.72%), Postives = 79/116 (68.10%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELR 411 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A + +R D + KLF LA RYKDR GGYTR++++ R GD APMA IEFVDR E + Sbjct: 8 RKLNRTAEHRKAMFANMSASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLAKRRQAISEMRDIDQVKKLFDVLAPRYKDRHGGYTRIIKAGFRYGDNAPMAVIEFVDRDVEAK 123 The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bpback to top |