CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HELMI (50S ribosomal protein L17 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RK +RPT HR ++LR + + L+KH +I TT  KAKE+RR+AD M+ LGK+G L A R+A AF++ + V+  LF E+A +Y  R GGYTR+L++  R GDAAPM  +E V
Sbjct:    3 YRKFSRPTNHRRALLRNITTSLLKHGKIVTTEPKAKELRRIADKMITLGKQGDLHARRQALAFIQEESVVTHLFKEIAPKYATRQGGYTRVLKAGFRRGDAAPMCIVELV 112          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOUR (50S ribosomal protein L17 OS=Geobacter uraniireducens (strain Rf4) GN=rplQ PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 61/134 (45.52%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR----ANELRQSKPAVPQPPPRAA 453
            ++L R T HR++M R MV+  + HERI TT  KAKE+R +A+ M+ LGK+G L A R+AA+++R   V+ KLFT +A RY +RAGGYTR+++  IR GD AP++ IE V+          + K  V +  P+AA
Sbjct:    8 KRLGRTTSHRIAMYRNMVTSFLNHERITTTDVKAKELRSIAEKMITLGKKGDLHAMRQAASYIRDKKVVTKLFTAIAPRYAERAGGYTRIIKLGIRPGDNAPLSVIELVEEELNAPKGTAKKKADVKKTAPKAA 141          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DIAST (50S ribosomal protein L17 OS=Diaphorobacter sp. (strain TPSY) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            RKLNR + HR++ML+ M++ L++HE I+TT+ KAKE+RR+ + M+ L KE S+   R A   +R  D + KLF +L  R+K R GGYTR+L+   RVGD APMAY+E VDRA
Sbjct:    8 RKLNRTSSHRLAMLQNMMNSLIEHEAIKTTLPKAKELRRVIEPMITLAKEDSVANRRLAFNRLRDRDSVTKLFNDLGPRFKTRPGGYTRILKMGFRVGDNAPMAYVELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ACISJ (50S ribosomal protein L17 OS=Acidovorax sp. (strain JS42) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            RKLNR + HR++ML+ M++ L++HE I+TT+ KAKE+RR+ + M+ L KE S+   R A   +R  D + KLF +L  R+K R GGYTR+L+   RVGD APMAY+E VDRA
Sbjct:    8 RKLNRTSSHRLAMLQNMMNSLIEHEAIKTTLPKAKELRRVIEPMITLAKEDSVANRRLAFNRLRDRDSVTKLFNDLGPRFKTRPGGYTRILKMGFRVGDNAPMAYVELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEWM (50S ribosomal protein L17 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLF EL  RY++R GGYTR+L+  +R GD APMAYIE V R  +
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAYIELVGRPED 121          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB9 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS195) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB8 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS185) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB5 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEB2 (50S ribosomal protein L17 OS=Shewanella baltica (strain OS223) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_NITWN (50S ribosomal protein L17 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 60/116 (51.72%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELR 411
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + +R  D + KLF  LA RYKDR GGYTR++++  R GD APMA IEFVDR  E +
Sbjct:    8 RKLNRTAEHRKAMFANMSASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLAKRRQAISEMRDIDQVKKLFDVLAPRYKDRHGGYTRIIKAGFRYGDNAPMAVIEFVDRDVEAK 123          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_HELMI4.103e-2650.9150S ribosomal protein L17 OS=Heliobacterium modest... [more]
RL17_GEOUR4.103e-2645.5250S ribosomal protein L17 OS=Geobacter uraniireduc... [more]
RL17_DIAST5.359e-2651.7950S ribosomal protein L17 OS=Diaphorobacter sp. (s... [more]
RL17_ACISJ5.359e-2651.7950S ribosomal protein L17 OS=Acidovorax sp. (strai... [more]
RL17_SHEWM6.999e-2651.7550S ribosomal protein L17 OS=Shewanella woodyi (st... [more]
RL17_SHEB96.999e-2653.1550S ribosomal protein L17 OS=Shewanella baltica (s... [more]
RL17_SHEB86.999e-2653.1550S ribosomal protein L17 OS=Shewanella baltica (s... [more]
RL17_SHEB56.999e-2653.1550S ribosomal protein L17 OS=Shewanella baltica (s... [more]
RL17_SHEB26.999e-2653.1550S ribosomal protein L17 OS=Shewanella baltica (s... [more]
RL17_NITWN6.999e-2651.7250S ribosomal protein L17 OS=Nitrobacter winograds... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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