CX296777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_NITHX (50S ribosomal protein L17 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A + +R D + KLF LA RYKDR GGYTR++++ R GD APMA IEFVDR Sbjct: 8 RKLNRTAEHRKAMFANMAASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLDKRRQAISEMRDIDQVKKLFAVLAPRYKDRQGGYTRIIKAGFRYGDNAPMAVIEFVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEVI (50S ribosomal protein L17 OS=Shewanella violacea GN=rplQ PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLF EL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHELP (50S ribosomal protein L17 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplQ PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLF EL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SILPO (50S ribosomal protein L17 OS=Silicibacter pomeroyi GN=rplQ PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25 Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 +R+LNR HR ++ M L++HE+I+TT+ KAKE+R + + ++ LGK G L A R+AAA ++ D + KLF LA RYKDR GGY R+L++ R GD APMA IEFVDR Sbjct: 7 YRRLNRTHEHRKALFANMAGSLIEHEQIKTTLPKAKELRPIVEKLITLGKRGDLHARRQAAAQLKEDKDVAKLFDVLAERYKDRQGGYVRILKAGFRYGDMAPMAIIEFVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOPS (50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplQ PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25 Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAVPQPPPRAA 453 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A + +R D + KLF LA RYKDR GGYTR++++ R GD APMA IEFVDR +E + K + P AA Sbjct: 8 RKLNRTAEHRKAMFANMCAALIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLDKRRQAISEMRDLDQVRKLFGVLAPRYKDRNGGYTRIIKAGFRYGDNAPMAVIEFVDR-DEDAKGKDSGPTQESEAA 136
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HAHCH (50S ribosomal protein L17 OS=Hahella chejuensis (strain KCTC 2396) GN=rplQ PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25 Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RK NR + HR SM R M + LV+HE I+TTV KAKE+RR+A+ ++ L K S+ R A + +R D + KLF E+ RYKDR GGY R+L+ +R GD+APMA++E VDR Sbjct: 8 RKFNRTSAHRKSMFRNMAASLVEHELIKTTVPKAKELRRVAEPLITLAKSDSVANRRLAFSRLRSRDAVTKLFEEIGPRYKDRPGGYLRILKCGLRPGDSAPMAFVELVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SYNWW (50S ribosomal protein L17 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplQ PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25 Identity = 54/111 (48.65%), Postives = 80/111 (72.07%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393 +R+L + HR S+LR V+ L+K E+I TT +AKE++RL + M+ LGK G L A R+AAA++ D+V+ KLF+++A RY++R GGYTRL+++ R GD APM IE V+ Sbjct: 3 YRRLGLRSDHRRSVLRNSVTSLLKEEKISTTETRAKEIKRLTEKMITLGKRGDLHARRQAAAYIMSDEVVQKLFSDIAARYEERNGGYTRLVKTGYRKGDGAPMVMIELVE 113
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEHH (50S ribosomal protein L17 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplQ PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M +V+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLFTEL R++DR GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMACSIVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRFQDRPGGYTRILKCGLRTGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOPB (50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplQ PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25 Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A + ++ D + KLF LA RY DR GGYTR++++ R GD APMA IEFVDR Sbjct: 8 RKLNRTAEHRKAMFANMCASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAISEMKDQDQVRKLFDVLAKRYADRQGGYTRIIKAGFRYGDNAPMAVIEFVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_METFK (50S ribosomal protein L17 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplQ PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25 Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR + HR +MLR M + L++HE I+TT+ KAKE+RR+A+ ++ LGK+ +L R A + +R D++ KLF EL RY+ R GGY R+L+ RVGD APMA +E VDR Sbjct: 8 RKLNRTSSHRQAMLRNMANSLLRHEIIKTTLPKAKELRRVAEPLITLGKDATLANRRLAFSRLRDRDIVGKLFNELGPRYQTRNGGYLRILKCGFRVGDNAPMALVELVDR 118 The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bpback to top |