CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_NITHX (50S ribosomal protein L17 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + +R  D + KLF  LA RYKDR GGYTR++++  R GD APMA IEFVDR
Sbjct:    8 RKLNRTAEHRKAMFANMAASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLDKRRQAISEMRDIDQVKKLFAVLAPRYKDRQGGYTRIIKAGFRYGDNAPMAVIEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEVI (50S ribosomal protein L17 OS=Shewanella violacea GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLF EL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHELP (50S ribosomal protein L17 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLF EL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SILPO (50S ribosomal protein L17 OS=Silicibacter pomeroyi GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            +R+LNR   HR ++   M   L++HE+I+TT+ KAKE+R + + ++ LGK G L A R+AAA ++ D  + KLF  LA RYKDR GGY R+L++  R GD APMA IEFVDR
Sbjct:    7 YRRLNRTHEHRKALFANMAGSLIEHEQIKTTLPKAKELRPIVEKLITLGKRGDLHARRQAAAQLKEDKDVAKLFDVLAERYKDRQGGYVRILKAGFRYGDMAPMAIIEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOPS (50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAVPQPPPRAA 453
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + +R  D + KLF  LA RYKDR GGYTR++++  R GD APMA IEFVDR +E  + K + P     AA
Sbjct:    8 RKLNRTAEHRKAMFANMCAALIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLDKRRQAISEMRDLDQVRKLFGVLAPRYKDRNGGYTRIIKAGFRYGDNAPMAVIEFVDR-DEDAKGKDSGPTQESEAA 136          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HAHCH (50S ribosomal protein L17 OS=Hahella chejuensis (strain KCTC 2396) GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RK NR + HR SM R M + LV+HE I+TTV KAKE+RR+A+ ++ L K  S+   R A + +R  D + KLF E+  RYKDR GGY R+L+  +R GD+APMA++E VDR
Sbjct:    8 RKFNRTSAHRKSMFRNMAASLVEHELIKTTVPKAKELRRVAEPLITLAKSDSVANRRLAFSRLRSRDAVTKLFEEIGPRYKDRPGGYLRILKCGLRPGDSAPMAFVELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SYNWW (50S ribosomal protein L17 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 54/111 (48.65%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393
            +R+L   + HR S+LR  V+ L+K E+I TT  +AKE++RL + M+ LGK G L A R+AAA++  D+V+ KLF+++A RY++R GGYTRL+++  R GD APM  IE V+
Sbjct:    3 YRRLGLRSDHRRSVLRNSVTSLLKEEKISTTETRAKEIKRLTEKMITLGKRGDLHARRQAAAYIMSDEVVQKLFSDIAARYEERNGGYTRLVKTGYRKGDGAPMVMIELVE 113          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEHH (50S ribosomal protein L17 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   +V+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  R++DR GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMACSIVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRFQDRPGGYTRILKCGLRTGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOPB (50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + ++  D + KLF  LA RY DR GGYTR++++  R GD APMA IEFVDR
Sbjct:    8 RKLNRTAEHRKAMFANMCASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAISEMKDQDQVRKLFDVLAKRYADRQGGYTRIIKAGFRYGDNAPMAVIEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_METFK (50S ribosomal protein L17 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR + HR +MLR M + L++HE I+TT+ KAKE+RR+A+ ++ LGK+ +L   R A + +R  D++ KLF EL  RY+ R GGY R+L+   RVGD APMA +E VDR
Sbjct:    8 RKLNRTSSHRQAMLRNMANSLLRHEIIKTTLPKAKELRRVAEPLITLGKDATLANRRLAFSRLRDRDIVGKLFNELGPRYQTRNGGYLRILKCGFRVGDNAPMALVELVDR 118          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_NITHX6.999e-2653.1550S ribosomal protein L17 OS=Nitrobacter hamburgen... [more]
RL17_SHEVI9.140e-2653.1550S ribosomal protein L17 OS=Shewanella violacea G... [more]
RL17_SHELP9.140e-2653.1550S ribosomal protein L17 OS=Shewanella loihica (s... [more]
RL17_SILPO1.194e-2550.8950S ribosomal protein L17 OS=Silicibacter pomeroyi... [more]
RL17_RHOPS1.194e-2549.2350S ribosomal protein L17 OS=Rhodopseudomonas palu... [more]
RL17_HAHCH1.194e-2551.3550S ribosomal protein L17 OS=Hahella chejuensis (s... [more]
RL17_SYNWW1.559e-2548.6550S ribosomal protein L17 OS=Syntrophomonas wolfei... [more]
RL17_SHEHH1.559e-2552.2550S ribosomal protein L17 OS=Shewanella halifaxens... [more]
RL17_RHOPB1.559e-2551.3550S ribosomal protein L17 OS=Rhodopseudomonas palu... [more]
RL17_METFK1.559e-2551.3550S ribosomal protein L17 OS=Methylobacillus flage... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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