CX296777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BARBK (50S ribosomal protein L17 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplQ PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25 Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR T HR +M M + L++HE+I TT+ KAKE+R + + +V LGK G L A R+A A +R + + KLF+ LA RY+ R GGY R++++ R GD APMA +EFVDR Sbjct: 8 RKLNRTTSHRKAMFANMAASLIEHEQIVTTLPKAKEIRPIVEKLVTLGKRGDLHARRQAIAAIRDTEKVAKLFSALAPRYESRHGGYLRIMKAGFRTGDNAPMAVVEFVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESH (50S ribosomal protein L17 OS=Shewanella sediminis (strain HAW-EB3) GN=rplQ PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25 Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405 R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K S+ R A A R +V+ KLF EL RY++R GGYTR+L+ +R GD APMA+IE V R + Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAFIELVGRPED 121
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PHOLL (50S ribosomal protein L17 OS=Photorhabdus luminescens subsp. laumondii GN=rplQ PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25 Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405 R+LNR + HR +M R M LV+HE I+TT+ KAKE+RR+ + ++ L K S+ R A A R ++++ KLF EL R+ RAGGYTR+L+ R GD APMAYIE VDRA E Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKIDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRATE 121
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BRAJA (50S ribosomal protein L17 OS=Bradyrhizobium japonicum GN=rplQ PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25 Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A + +R D + KLF LA RYKDR GGYTR++++ R GD A MA IEFVDR Sbjct: 8 RKLNRTAEHRRAMFANMAAALIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLAMRRQAISEMRDKDQVKKLFDVLATRYKDRQGGYTRIIKAGFRYGDNAAMAVIEFVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_METPP (50S ribosomal protein L17 OS=Methylibium petroleiphilum (strain PM1) GN=rplQ PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25 Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQS 417 RKLNR + HR++MLR M + L++ E I+TTV KAKE+RR+ + ++ L KE +L R A R DV+ KLF +L RYK R GGYTR+L+ RVGD APMA++E VDR Q+ Sbjct: 8 RKLNRTSEHRLAMLRNMANSLIQSEAIKTTVPKAKELRRVVEPLITLAKEPTLANRRLAFDRTRDRDVVAKLFNDLGPRYKARPGGYTRILKMGFRVGDNAPMAFVELVDRPEPAAQA 125
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_CLOD6 (50S ribosomal protein L17 OS=Clostridium difficile (strain 630) GN=rplQ PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25 Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1 Query: 52 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 M K+RKL R T HR MLR +V+ L++ RIETTV +AKE RR+A+ M+ L K G L A R+ A+V + V++ LFT+LA +Y +R GGYTR+++ R GDAA MA+IE V Sbjct: 1 MAKYRKLGRETAHRNLMLRNLVTCLLRSGRIETTVTRAKETRRMAEKMITLAKRGDLHARRQVLAYVMDETVVNNLFTDLAPKYAERNGGYTRIIKIGPRKGDAAEMAFIELV 113
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BRASO (50S ribosomal protein L17 OS=Bradyrhizobium sp. (strain ORS278) GN=rplQ PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25 Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A A +R D + KLF LA RYKDR GGYTR++++ R GD A MA IEFVDR Sbjct: 8 RKLNRTAEHRKAMFANMCASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAIAEMRDVDQVKKLFDVLAPRYKDRNGGYTRIIKAGFRYGDNAAMAVIEFVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ACICJ (50S ribosomal protein L17 OS=Acidiphilium cryptum (strain JF-5) GN=rplQ PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25 Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKL HR +M R M L+KHE+I TT+ KAKE+R +A+ ++ LGK G L A R+A A +R D ++ KLF LA RYK+R GGYTR+L++ +R GDAA MA IE VDR Sbjct: 8 RKLGVTASHRAAMFRNMAVALLKHEQITTTLPKAKELRPVAEKLITLGKRGGLHARRQAHALLRDDVIVAKLFDSLADRYKERQGGYTRVLKAGMRYGDAADMAVIELVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SODGM (50S ribosomal protein L17 OS=Sodalis glossinidius (strain morsitans) GN=rplQ PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R+LNR + HR +M R M LV+HE I+TT+ KAKE+RR+ + ++ L K S+ R A A R ++++ KLF EL R+ RAGGYTR+L+ R GD APMAYIEFVD A Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIEFVDHA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PECCP (50S ribosomal protein L17 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplQ PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R+LNR + HR +M R M S LV+HE I+TT+ KAKE+RR+ + ++ L K S+ R A A R ++++ KLF EL R+ RAGGYTR+L+ R GD APMAYIE VDR+ Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119 The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bpback to top |