CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BARBK (50S ribosomal protein L17 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR T HR +M   M + L++HE+I TT+ KAKE+R + + +V LGK G L A R+A A +R  + + KLF+ LA RY+ R GGY R++++  R GD APMA +EFVDR
Sbjct:    8 RKLNRTTSHRKAMFANMAASLIEHEQIVTTLPKAKEIRPIVEKLVTLGKRGDLHARRQAIAAIRDTEKVAKLFSALAPRYESRHGGYLRIMKAGFRTGDNAPMAVVEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHESH (50S ribosomal protein L17 OS=Shewanella sediminis (strain HAW-EB3) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLF EL  RY++R GGYTR+L+  +R GD APMA+IE V R  +
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFNELGPRYQERPGGYTRILKCGLRTGDKAPMAFIELVGRPED 121          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PHOLL (50S ribosomal protein L17 OS=Photorhabdus luminescens subsp. laumondii GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA E
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKIDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRATE 121          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BRAJA (50S ribosomal protein L17 OS=Bradyrhizobium japonicum GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + +R  D + KLF  LA RYKDR GGYTR++++  R GD A MA IEFVDR
Sbjct:    8 RKLNRTAEHRRAMFANMAAALIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLAMRRQAISEMRDKDQVKKLFDVLATRYKDRQGGYTRIIKAGFRYGDNAAMAVIEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_METPP (50S ribosomal protein L17 OS=Methylibium petroleiphilum (strain PM1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQS 417
            RKLNR + HR++MLR M + L++ E I+TTV KAKE+RR+ + ++ L KE +L   R A    R  DV+ KLF +L  RYK R GGYTR+L+   RVGD APMA++E VDR     Q+
Sbjct:    8 RKLNRTSEHRLAMLRNMANSLIQSEAIKTTVPKAKELRRVVEPLITLAKEPTLANRRLAFDRTRDRDVVAKLFNDLGPRYKARPGGYTRILKMGFRVGDNAPMAFVELVDRPEPAAQA 125          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_CLOD6 (50S ribosomal protein L17 OS=Clostridium difficile (strain 630) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   52 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            M K+RKL R T HR  MLR +V+ L++  RIETTV +AKE RR+A+ M+ L K G L A R+  A+V  + V++ LFT+LA +Y +R GGYTR+++   R GDAA MA+IE V
Sbjct:    1 MAKYRKLGRETAHRNLMLRNLVTCLLRSGRIETTVTRAKETRRMAEKMITLAKRGDLHARRQVLAYVMDETVVNNLFTDLAPKYAERNGGYTRIIKIGPRKGDAAEMAFIELV 113          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BRASO (50S ribosomal protein L17 OS=Bradyrhizobium sp. (strain ORS278) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A A +R  D + KLF  LA RYKDR GGYTR++++  R GD A MA IEFVDR
Sbjct:    8 RKLNRTAEHRKAMFANMCASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAIAEMRDVDQVKKLFDVLAPRYKDRNGGYTRIIKAGFRYGDNAAMAVIEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ACICJ (50S ribosomal protein L17 OS=Acidiphilium cryptum (strain JF-5) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKL     HR +M R M   L+KHE+I TT+ KAKE+R +A+ ++ LGK G L A R+A A +R D ++ KLF  LA RYK+R GGYTR+L++ +R GDAA MA IE VDR
Sbjct:    8 RKLGVTASHRAAMFRNMAVALLKHEQITTTLPKAKELRPVAEKLITLGKRGGLHARRQAHALLRDDVIVAKLFDSLADRYKERQGGYTRVLKAGMRYGDAADMAVIELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SODGM (50S ribosomal protein L17 OS=Sodalis glossinidius (strain morsitans) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIEFVD A
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIEFVDHA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PECCP (50S ribosomal protein L17 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_BARBK1.559e-2550.4550S ribosomal protein L17 OS=Bartonella bacillifor... [more]
RL17_SHESH2.036e-2550.8850S ribosomal protein L17 OS=Shewanella sediminis ... [more]
RL17_PHOLL2.036e-2550.8850S ribosomal protein L17 OS=Photorhabdus luminesc... [more]
RL17_BRAJA2.036e-2552.2550S ribosomal protein L17 OS=Bradyrhizobium japoni... [more]
RL17_METPP2.659e-2550.0050S ribosomal protein L17 OS=Methylibium petroleip... [more]
RL17_CLOD62.659e-2551.3350S ribosomal protein L17 OS=Clostridium difficile... [more]
RL17_BRASO2.659e-2553.1550S ribosomal protein L17 OS=Bradyrhizobium sp. (s... [more]
RL17_ACICJ2.659e-2553.1550S ribosomal protein L17 OS=Acidiphilium cryptum ... [more]
RL17_SODGM3.473e-2550.8950S ribosomal protein L17 OS=Sodalis glossinidius ... [more]
RL17_PECCP3.473e-2550.8950S ribosomal protein L17 OS=Pectobacterium caroto... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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