CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PSEPF (50S ribosomal protein L17 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R L+R + HR +M + M   L +HE I+TT+ KAKE+RR+A+ ++ L K  S+   R A    R   ++ KLF +L  RY  R GGY R+L+   R GD APMAY+E VDRA
Sbjct:    8 RHLSRTSSHRKAMFQNMAVSLFEHELIKTTLPKAKELRRVAEPLITLAKTDSVANRRLAFDRTRSKAIVGKLFNDLGKRYATREGGYLRILKCGFRAGDNAPMAYVELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_NITOC (50S ribosomal protein L17 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   L++HE I TT+ KAKE RR+A+ ++ L KE S+   R   + +R    + KLF EL  RY+ R GGY R+L+   R GD APMA +E ++R
Sbjct:    8 RRLNRTSAHRKAMFRNMAVSLIEHEMINTTLPKAKEFRRVAEPLITLAKEDSVANRRLVFSRLRDRKAVTKLFNELGPRYQARPGGYLRILKRGFRAGDNAPMAIVELLER 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HALOH (50S ribosomal protein L17 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393
            RKL +   HR +M R M++   +H RIETT+ KAKE+R LA+ M+   K   L + R+   +V+  +V+ KLF E+A RY +R GGYTR+L+   R GDAA  A IE V+
Sbjct:    4 RKLGKTGAHRKAMFRNMLTDFFRHGRIETTLPKAKELRSLAEKMITTAKTNDLSSRRKVLKYVKDKEVVKKLFDEIAPRYSERPGGYTRILKMYPRRGDAAEKAIIELVE 113          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DEHSC (50S ribosomal protein L17 OS=Dehalococcoides sp. (strain CBDB1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            R+ +RPTG RMS+ R +V+ L+ +E I  +  +AKE+R +A+ M+ LGK+G+L + RRA AFV    ++ K+F +L+ RY +R GGYTR+ +   R GD A M  +E +
Sbjct:    8 RRFDRPTGQRMSLYRNLVTDLLNYEEITISEPRAKEIRSMAEKMITLGKKGTLASRRRALAFVYMPGIVEKVFEDLSKRYAERPGGYTRMTKLGPRQGDGAEMVKLELI 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DEHSB (50S ribosomal protein L17 OS=Dehalococcoides sp. (strain BAV1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            R+ +RPTG RMS+ R +V+ L+ +E I  +  +AKE+R +A+ M+ LGK+G+L + RRA AFV    ++ K+F +L+ RY +R GGYTR+ +   R GD A M  +E +
Sbjct:    8 RRFDRPTGQRMSLYRNLVTDLLNYEEITISEPRAKEIRSMAEKMITLGKKGTLASRRRALAFVYMPGIVEKVFEDLSKRYAERPGGYTRMTKLGPRQGDGAEMVKLELI 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ANAMF (50S ribosomal protein L17 OS=Anaplasma marginale (strain Florida) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLG----KEGSLCAARRAAAFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RK +RPT HR+SML  +   L++HERI TTVAKAK++R   + +V +G    K+  +   R   + + GD D ++KL   LA RY  R GGYTR+L++  R GD AP+A +EFVDR
Sbjct:    8 RKFSRPTAHRLSMLANLAVSLIRHERIVTTVAKAKDLRPFVERLVTVGRRLAKKDPVRGRRLLLSKMGGDLDAVNKLLDVLAKRYARRPGGYTRILKNGFRAGDCAPIAIMEFVDR 123          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_TREDE (50S ribosomal protein L17 OS=Treponema denticola GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393
            F  L+R T HR ++ R MV+ L K+ERI TT  KA EVRR A+ ++   K  +    R AA ++  DD++ KLF+++  R KDR GGYTR+L+   R GDAA +A +E VD
Sbjct:    7 FNPLSRTTAHRRALHRNMVTSLFKYERITTTKQKAMEVRRTAEKLITRSKVDTFNNRRHAAKYIWDDDIVKKLFSDIGPRMKDRNGGYTRILKIGFREGDAADVAILELVD 117          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SYNY3 (50S ribosomal protein L17 OS=Synechocystis sp. (strain PCC 6803) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +L +P   R ++LR + ++L++H +I+TT A+AK VR   D M+ L K+GSL A RRA  ++     +H LF +   RYKDR GGYTR++R+  R GD A MA IE V
Sbjct:    9 QLGKPADQRKALLRALTTELIRHGQIKTTKARAKAVRSEVDRMITLAKDGSLAARRRALGYMYDKPTVHALFADAPSRYKDRDGGYTRIIRTLRRRGDNAEMAVIELV 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_STRA5 (50S ribosomal protein L17 OS=Streptococcus agalactiae serotype V GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD----------------DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RKL R +  R +MLR + + L+ +E I TT A+AKE+R+  + M+ LGK G L A R+AAA+VR +                  + KLF ++A RY +R GGYTR+L++  R GDAAPMA IE V
Sbjct:    3 YRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAAYVRNEIASENYDEASDKYTSTTALQKLFDDIAPRYAERNGGYTRILKTEPRRGDAAPMAIIELV 128          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_STRA3 (50S ribosomal protein L17 OS=Streptococcus agalactiae serotype III GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD----------------DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RKL R +  R +MLR + + L+ +E I TT A+AKE+R+  + M+ LGK G L A R+AAA+VR +                  + KLF ++A RY +R GGYTR+L++  R GDAAPMA IE V
Sbjct:    3 YRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAAYVRNEIASENYDEASDKYTSTTALQKLFDDIAPRYAERNGGYTRILKTEPRRGDAAPMAIIELV 128          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_PSEPF6.779e-2145.5450S ribosomal protein L17 OS=Pseudomonas fluoresce... [more]
RL17_NITOC6.779e-2145.0550S ribosomal protein L17 OS=Nitrosococcus oceani ... [more]
RL17_HALOH6.779e-2145.4550S ribosomal protein L17 OS=Halothermothrix oreni... [more]
RL17_DEHSC6.779e-2143.1250S ribosomal protein L17 OS=Dehalococcoides sp. (... [more]
RL17_DEHSB6.779e-2143.1250S ribosomal protein L17 OS=Dehalococcoides sp. (... [more]
RL17_ANAMF6.779e-2146.5550S ribosomal protein L17 OS=Anaplasma marginale (... [more]
RL17_TREDE8.853e-2145.9550S ribosomal protein L17 OS=Treponema denticola G... [more]
RL17_SYNY38.853e-2145.3750S ribosomal protein L17 OS=Synechocystis sp. (st... [more]
RL17_STRA58.853e-2143.6550S ribosomal protein L17 OS=Streptococcus agalact... [more]
RL17_STRA38.853e-2143.6550S ribosomal protein L17 OS=Streptococcus agalact... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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