CX296777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PSEPF (50S ribosomal protein L17 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplQ PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21 Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R L+R + HR +M + M L +HE I+TT+ KAKE+RR+A+ ++ L K S+ R A R ++ KLF +L RY R GGY R+L+ R GD APMAY+E VDRA Sbjct: 8 RHLSRTSSHRKAMFQNMAVSLFEHELIKTTLPKAKELRRVAEPLITLAKTDSVANRRLAFDRTRSKAIVGKLFNDLGKRYATREGGYLRILKCGFRAGDNAPMAYVELVDRA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_NITOC (50S ribosomal protein L17 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplQ PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21 Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M L++HE I TT+ KAKE RR+A+ ++ L KE S+ R + +R + KLF EL RY+ R GGY R+L+ R GD APMA +E ++R Sbjct: 8 RRLNRTSAHRKAMFRNMAVSLIEHEMINTTLPKAKEFRRVAEPLITLAKEDSVANRRLVFSRLRDRKAVTKLFNELGPRYQARPGGYLRILKRGFRAGDNAPMAIVELLER 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HALOH (50S ribosomal protein L17 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplQ PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21 Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393 RKL + HR +M R M++ +H RIETT+ KAKE+R LA+ M+ K L + R+ +V+ +V+ KLF E+A RY +R GGYTR+L+ R GDAA A IE V+ Sbjct: 4 RKLGKTGAHRKAMFRNMLTDFFRHGRIETTLPKAKELRSLAEKMITTAKTNDLSSRRKVLKYVKDKEVVKKLFDEIAPRYSERPGGYTRILKMYPRRGDAAEKAIIELVE 113
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DEHSC (50S ribosomal protein L17 OS=Dehalococcoides sp. (strain CBDB1) GN=rplQ PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21 Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 R+ +RPTG RMS+ R +V+ L+ +E I + +AKE+R +A+ M+ LGK+G+L + RRA AFV ++ K+F +L+ RY +R GGYTR+ + R GD A M +E + Sbjct: 8 RRFDRPTGQRMSLYRNLVTDLLNYEEITISEPRAKEIRSMAEKMITLGKKGTLASRRRALAFVYMPGIVEKVFEDLSKRYAERPGGYTRMTKLGPRQGDGAEMVKLELI 116
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DEHSB (50S ribosomal protein L17 OS=Dehalococcoides sp. (strain BAV1) GN=rplQ PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21 Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 R+ +RPTG RMS+ R +V+ L+ +E I + +AKE+R +A+ M+ LGK+G+L + RRA AFV ++ K+F +L+ RY +R GGYTR+ + R GD A M +E + Sbjct: 8 RRFDRPTGQRMSLYRNLVTDLLNYEEITISEPRAKEIRSMAEKMITLGKKGTLASRRRALAFVYMPGIVEKVFEDLSKRYAERPGGYTRMTKLGPRQGDGAEMVKLELI 116
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ANAMF (50S ribosomal protein L17 OS=Anaplasma marginale (strain Florida) GN=rplQ PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21 Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLG----KEGSLCAARRAAAFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RK +RPT HR+SML + L++HERI TTVAKAK++R + +V +G K+ + R + + GD D ++KL LA RY R GGYTR+L++ R GD AP+A +EFVDR Sbjct: 8 RKFSRPTAHRLSMLANLAVSLIRHERIVTTVAKAKDLRPFVERLVTVGRRLAKKDPVRGRRLLLSKMGGDLDAVNKLLDVLAKRYARRPGGYTRILKNGFRAGDCAPIAIMEFVDR 123
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_TREDE (50S ribosomal protein L17 OS=Treponema denticola GN=rplQ PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21 Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393 F L+R T HR ++ R MV+ L K+ERI TT KA EVRR A+ ++ K + R AA ++ DD++ KLF+++ R KDR GGYTR+L+ R GDAA +A +E VD Sbjct: 7 FNPLSRTTAHRRALHRNMVTSLFKYERITTTKQKAMEVRRTAEKLITRSKVDTFNNRRHAAKYIWDDDIVKKLFSDIGPRMKDRNGGYTRILKIGFREGDAADVAILELVD 117
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SYNY3 (50S ribosomal protein L17 OS=Synechocystis sp. (strain PCC 6803) GN=rplQ PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21 Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +L +P R ++LR + ++L++H +I+TT A+AK VR D M+ L K+GSL A RRA ++ +H LF + RYKDR GGYTR++R+ R GD A MA IE V Sbjct: 9 QLGKPADQRKALLRALTTELIRHGQIKTTKARAKAVRSEVDRMITLAKDGSLAARRRALGYMYDKPTVHALFADAPSRYKDRDGGYTRIIRTLRRRGDNAEMAVIELV 116
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_STRA5 (50S ribosomal protein L17 OS=Streptococcus agalactiae serotype V GN=rplQ PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21 Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD----------------DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +RKL R + R +MLR + + L+ +E I TT A+AKE+R+ + M+ LGK G L A R+AAA+VR + + KLF ++A RY +R GGYTR+L++ R GDAAPMA IE V Sbjct: 3 YRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAAYVRNEIASENYDEASDKYTSTTALQKLFDDIAPRYAERNGGYTRILKTEPRRGDAAPMAIIELV 128
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_STRA3 (50S ribosomal protein L17 OS=Streptococcus agalactiae serotype III GN=rplQ PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21 Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD----------------DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +RKL R + R +MLR + + L+ +E I TT A+AKE+R+ + M+ LGK G L A R+AAA+VR + + KLF ++A RY +R GGYTR+L++ R GDAAPMA IE V Sbjct: 3 YRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAAYVRNEIASENYDEASDKYTSTTALQKLFDDIAPRYAERNGGYTRILKTEPRRGDAAPMAIIELV 128 The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bpback to top |