CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_CYAP7 (50S ribosomal protein L17 OS=Cyanothece sp. (strain PCC 7424) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +L RP   R ++LR + ++L++H +I TT+ +AK VR  AD M+ L K+GSL A R+A  ++    ++H+LF +   RY +R GGYTR++R+  R GD A MA IE V
Sbjct:    9 QLGRPADQRKALLRALTTELIRHGQITTTLTRAKAVRSQADKMITLAKDGSLAARRQAMGYIYDKQLVHRLFDQAQERYSNRNGGYTRVVRTLRRRGDNAEMAIIELV 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_CLOB8 (50S ribosomal protein L17 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   52 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            M   RKL  PT  R +MLR +V+ L+KH +IETT  +AKE R +A+ M+ LGK G L A R+  ++V+ + V+  LF  +A +Y +R GGYTR+++   R GD A +  +E V
Sbjct:    1 MAGHRKLGLPTDQRRAMLRNLVTSLLKHGKIETTETRAKETRSIAEKMITLGKRGDLHARRQVLSYVQEELVVKNLFDNVAPKYTERNGGYTRIIKKGPRRGDGAEIVILELV 113          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BLOPB (50S ribosomal protein L17 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 48/111 (43.24%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            KLNR + HR +M + MV  LV H+ I+TT++KAK +RR+ + ++   K  ++   R   +  R +DV+ KLFT+++  + +R GGYTR+L+  +R GD APMAYIE V+R+
Sbjct:    9 KLNRTSAHRKAMFKNMVVSLVMHKIIKTTLSKAKALRRIIEPLITRSKVDTIANRRLIFSKTRNNDVVTKLFTQISPYFYNRPGGYTRILKCGLRKGDNAPMAYIELVERS 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ANAVT (50S ribosomal protein L17 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   58 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            + +KL +P   R ++LR + ++L++H RI TT+ +AK VR   D ++ L K+GSL A RRA  ++    ++H LF +++ RY +R GGYTR+L +  R GD A MA IE V
Sbjct:    6 RVKKLGKPADQRRALLRALTTELIRHGRITTTLVRAKVVRSEVDKIITLAKDGSLAARRRALGYIYDKQLVHALFEQVSSRYGNRQGGYTRILHTVPRRGDNAEMAIIELV 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ANASP (50S ribosomal protein L17 OS=Anabaena sp. (strain PCC 7120) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   58 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            + +KL +P   R ++LR + ++L++H RI TT+ +AK VR   D ++ L K+GSL A RRA  ++    ++H LF +++ RY +R GGYTR+L +  R GD A MA IE V
Sbjct:    6 RVKKLGKPADQRRALLRALTTELIRHGRITTTLVRAKVVRSEVDKIITLAKDGSLAARRRALGYIYDKQLVHALFEQVSSRYGNRQGGYTRILHTVPRRGDNAEMAIIELV 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ACAM1 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/109 (43.12%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   58 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 384
            +  KL +P   R ++LR++ +QL++H R+ TT A+AK VR   + M+ L K+GSL + R+A  ++    ++H LF ++A RY DR GGYTR++R+  R GD A MA IE
Sbjct:    6 RVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSLASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIE 114          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RUTMC (50S ribosomal protein L17 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 393
            R+LNR + HR +M + M + L  HE I TT++KAKE+RR+ + ++   K  S+   R   + +R D ++ KLFTELA  YKDR GGY R+L++  R GD A MA ++ VD
Sbjct:    8 RQLNRNSSHRKAMFKNMANSLFLHETIRTTLSKAKELRRVVEPLITKAKIDSVANRRNIFSKLRDDAIVAKLFTELAPFYKDRPGGYIRILKAGFRAGDKALMAIVQLVD 117          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PROMM (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            KL RPT  R +MLR + +QL++  R+ TT A+AK +R  A+ M+ L K GSL + RRA  ++    ++H LF +   RY DR GGYTR++R+  R GD A MA IE V
Sbjct:    9 KLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PROM3 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   67 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            KL RPT  R +MLR + +QL++  R+ TT A+AK +R  A+ M+ L K GSL + RRA  ++    ++H LF +   RY DR GGYTR++R+  R GD A MA IE V
Sbjct:    9 KLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_EHRCJ (50S ribosomal protein L17 OS=Ehrlichia canis (strain Jake) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGK----EGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RK +R + HRM+ML  M   L+KHERI TT+ KAKE+R   + ++ +GK    +  +   R   + ++  D  +KL   L+ RYK R GGYTR++++  R GD+APMA IE VDR
Sbjct:    8 RKFSRTSAHRMAMLLNMCISLIKHERISTTLPKAKELRPYVEKLITIGKVYHGKNLVYGKRLLISKIKNPDAANKLIDVLSIRYKSRNGGYTRIIKNGFRKGDSAPMAIIELVDR 122          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_CYAP73.364e-2043.5250S ribosomal protein L17 OS=Cyanothece sp. (strai... [more]
RL17_CLOB83.364e-2043.3650S ribosomal protein L17 OS=Clostridium beijerinc... [more]
RL17_BLOPB3.364e-2043.2450S ribosomal protein L17 OS=Blochmannia pennsylva... [more]
RL17_ANAVT3.364e-2042.3450S ribosomal protein L17 OS=Anabaena variabilis (... [more]
RL17_ANASP3.364e-2042.3450S ribosomal protein L17 OS=Anabaena sp. (strain ... [more]
RL17_ACAM13.364e-2043.1250S ribosomal protein L17 OS=Acaryochloris marina ... [more]
RL17_RUTMC4.394e-2044.5550S ribosomal protein L17 OS=Ruthia magnifica subs... [more]
RL17_PROMM4.394e-2046.3050S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_PROM34.394e-2046.3050S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_EHRCJ4.394e-2043.4850S ribosomal protein L17 OS=Ehrlichia canis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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