CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ERWCT (50S ribosomal protein L17 OS=Erwinia carotovora subsp. atroseptica GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_BRASB (50S ribosomal protein L17 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A A +R  D + KLF  LA RYKDR GGYTR++++  R GD A MA IEFVDR
Sbjct:    8 RKLNRTAEHRKAMFANMCAALIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAIAEMRDVDQVKKLFDVLAPRYKDRNGGYTRIIKAGFRYGDNAAMAVIEFVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_AERS4 (50S ribosomal protein L17 OS=Aeromonas salmonicida (strain A449) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R + ++ KLF EL  RY +RAGGYTR+L+   R GD APMAYIE VDR
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNAIVAKLFNELGPRYLERAGGYTRILKCGFRAGDNAPMAYIELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_AERHH (50S ribosomal protein L17 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplQ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R + ++ KLF EL  RY +RAGGYTR+L+   R GD APMAYIE VDR
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNAIVAKLFNELGPRYLERAGGYTRILKCGFRAGDNAPMAYIELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_YERE8 (50S ribosomal protein L17 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_VIBFM (50S ribosomal protein L17 OS=Vibrio fischeri (strain MJ11) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M   M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++V+ KLFTEL  R+  RAGGYTR+L+   R GD APMAYIE VDR
Sbjct:    8 RQLNRNSSHRKAMFSNMASSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEVVAKLFTELGPRFAQRAGGYTRILKCGFRAGDKAPMAYIELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_VIBF1 (50S ribosomal protein L17 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M   M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++V+ KLFTEL  R+  RAGGYTR+L+   R GD APMAYIE VDR
Sbjct:    8 RQLNRNSSHRKAMFSNMASSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEVVAKLFTELGPRFAQRAGGYTRILKCGFRAGDKAPMAYIELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_THETN (50S ribosomal protein L17 OS=Thermoanaerobacter tengcongensis GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RKL RP+  R +MLR +V+  +++ERI TT A+AKEVR++A+ M+ LGK G L A R+A A++  + V+ KLF ++A RYK+R GGYTR+ +   R GD AP+A IE V
Sbjct:    3 YRKLGRPSDQRRAMLRNLVTDFLRYERITTTEARAKEVRKIAEKMITLGKRGDLHARRQALAYILDESVVKKLFDDIAPRYKERNGGYTRIFKLGPRRGDGAPLAVIELV 112          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEPW (50S ribosomal protein L17 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   +V+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  R+++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMACSIVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRFQERPGGYTRILKCGLRTGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEPA (50S ribosomal protein L17 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M   +V+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL  R+++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMACSIVRHEVIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTELGPRFQERPGGYTRILKCGLRTGDKAPMAYIELVGR 118          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_ERWCT3.473e-2550.8950S ribosomal protein L17 OS=Erwinia carotovora su... [more]
RL17_BRASB3.473e-2553.1550S ribosomal protein L17 OS=Bradyrhizobium sp. (s... [more]
RL17_AERS43.473e-2552.2550S ribosomal protein L17 OS=Aeromonas salmonicida... [more]
RL17_AERHH3.473e-2552.2550S ribosomal protein L17 OS=Aeromonas hydrophila ... [more]
RL17_YERE84.536e-2550.8950S ribosomal protein L17 OS=Yersinia enterocoliti... [more]
RL17_VIBFM4.536e-2552.2550S ribosomal protein L17 OS=Vibrio fischeri (stra... [more]
RL17_VIBF14.536e-2552.2550S ribosomal protein L17 OS=Vibrio fischeri (stra... [more]
RL17_THETN4.536e-2550.0050S ribosomal protein L17 OS=Thermoanaerobacter te... [more]
RL17_SHEPW4.536e-2551.3550S ribosomal protein L17 OS=Shewanella piezotoler... [more]
RL17_SHEPA4.536e-2551.3550S ribosomal protein L17 OS=Shewanella pealeana (... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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