CX296777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEAM (50S ribosomal protein L17 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+LNR + HR +M R M S LV+HE I+TT KAKE+RR+ + ++ L K S+ R A A R +V+ KLF EL RY++R GGYTR+L+ +R GD APMAYIE V R Sbjct: 8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTAVKAKELRRVVEPLITLAKSDSVANRRLAFARTRDQEVVGKLFNELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SERP5 (50S ribosomal protein L17 OS=Serratia proteamaculans (strain 568) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R+LNR + HR +M R M LV+HE I+TT+ KAKE+RR+ + ++ L K S+ R A A R ++++ KLF EL R+ RAGGYTR+L+ R GD APMAYIE VDRA Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOP2 (50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELR 411 RKLNR HR +M M + L+KHE+I TT+ KAKE+R + + +V LGK+G L R+A + +R D + KLF LA RY DR GGYTR++++ R GD APMA IEFVDR + + Sbjct: 8 RKLNRTAEHRKAMFANMCAALIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLDKRRQAISEMRDLDQVRKLFDVLAKRYADRQGGYTRIIKAGFRYGDNAPMAVIEFVDRDEDAK 123
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PROMH (50S ribosomal protein L17 OS=Proteus mirabilis (strain HI4320) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRAN 402 R+LNR + HR +M R M LV+HE I+TT+ KAKE+RR+ + ++ L K S+ R A A R ++V+ KLFT L R+ RAGGYTR+L+ R GD APMAYIE VDRA+ Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEVVAKLFTVLGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRAD 120
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_KLEP7 (50S ribosomal protein L17 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R+LNR + HR +M R M LV+HE I+TT+ KAKE+RR+ + ++ L K S+ R A A R ++++ KLF EL R+ RAGGYTR+L+ R GD APMAYIE VDRA Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_KLEP3 (50S ribosomal protein L17 OS=Klebsiella pneumoniae (strain 342) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R+LNR + HR +M R M LV+HE I+TT+ KAKE+RR+ + ++ L K S+ R A A R ++++ KLF EL R+ RAGGYTR+L+ R GD APMAYIE VDRA Sbjct: 8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_FUSNN (50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplQ PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 53/110 (48.18%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +RKL R HR +ML+ M L+K ERIETTV +AKE+R+ A+ M+ GK+ +L + R A AF+R ++V+ K+F E+A +Y +R GGYTR++++ +R GD+A MA IE V Sbjct: 7 YRKLGRRADHRKAMLKNMTISLIKAERIETTVTRAKELRKFAERMITFGKKNTLASRRNAFAFLRDEEVVAKIFNEIAPKYAERNGGYTRIIKTSVRKGDSAEMAIIELV 116
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_POLSJ (50S ribosomal protein L17 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25 Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 RKLNR + HR++MLR M++ L++HE I+TT+ KAKE+RR+ + M+ L KE ++ R A +R D++ KLF EL RYK R GGYTR+L+ RVGD APMA +E VDR Sbjct: 8 RKLNRTSEHRLAMLRNMMNSLLQHEVIKTTLPKAKELRRVVEPMITLAKEPTVANKRLAFDRLRDRDMVVKLFAELGPRYKARPGGYTRILKMGFRVGDNAPMALVELVDR 118
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_MOOTA (50S ribosomal protein L17 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25 Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +RKL R GHR MLR +V+ L+KH +IETT +AKE++ LA+ M+ LGK G L + R+A A++ +DV+ KLF E+ RY D+ GGYTR++++ R GD APM IE V Sbjct: 3 YRKLGRLAGHRKMMLRNIVTSLLKHGKIETTELRAKELKSLAEKMITLGKRGDLHSRRQALAYLLDEDVVTKLFKEIGPRYADKNGGYTRIVKTGFRQGDGAPMVLIELV 112
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HAMD5 (50S ribosomal protein L17 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplQ PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25 Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R+LNR + HR +M R M S LV+HE I+TTV KAKE+RR+ + ++ L K S+ R A A +R +D++ KLF EL R+ RAGGYTR+L+ R GD AP+AYIE +DR+ Sbjct: 8 RQLNRNSSHRRAMFRNMASSLVRHEIIKTTVPKAKELRRVVEPLITLAKTDSVANRRLAFARIRDNDIVVKLFNELGPRFVSRAGGYTRILKCGSRAGDNAPVAYIELLDRS 119 The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bpback to top |