CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SHEAM (50S ribosomal protein L17 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV+HE I+TT  KAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLF EL  RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTAVKAKELRRVVEPLITLAKSDSVANRRLAFARTRDQEVVGKLFNELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SERP5 (50S ribosomal protein L17 OS=Serratia proteamaculans (strain 568) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOP2 (50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELR 411
            RKLNR   HR +M   M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + +R  D + KLF  LA RY DR GGYTR++++  R GD APMA IEFVDR  + +
Sbjct:    8 RKLNRTAEHRKAMFANMCAALIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLDKRRQAISEMRDLDQVRKLFDVLAKRYADRQGGYTRIIKAGFRYGDNAPMAVIEFVDRDEDAK 123          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_PROMH (50S ribosomal protein L17 OS=Proteus mirabilis (strain HI4320) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRAN 402
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++V+ KLFT L  R+  RAGGYTR+L+   R GD APMAYIE VDRA+
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEVVAKLFTVLGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRAD 120          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_KLEP7 (50S ribosomal protein L17 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_KLEP3 (50S ribosomal protein L17 OS=Klebsiella pneumoniae (strain 342) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_FUSNN (50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 53/110 (48.18%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RKL R   HR +ML+ M   L+K ERIETTV +AKE+R+ A+ M+  GK+ +L + R A AF+R ++V+ K+F E+A +Y +R GGYTR++++ +R GD+A MA IE V
Sbjct:    7 YRKLGRRADHRKAMLKNMTISLIKAERIETTVTRAKELRKFAERMITFGKKNTLASRRNAFAFLRDEEVVAKIFNEIAPKYAERNGGYTRIIKTSVRKGDSAEMAIIELV 116          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_POLSJ (50S ribosomal protein L17 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKLNR + HR++MLR M++ L++HE I+TT+ KAKE+RR+ + M+ L KE ++   R A   +R  D++ KLF EL  RYK R GGYTR+L+   RVGD APMA +E VDR
Sbjct:    8 RKLNRTSEHRLAMLRNMMNSLLQHEVIKTTLPKAKELRRVVEPMITLAKEPTVANKRLAFDRLRDRDMVVKLFAELGPRYKARPGGYTRILKMGFRVGDNAPMALVELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_MOOTA (50S ribosomal protein L17 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = 1
Query:   61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390
            +RKL R  GHR  MLR +V+ L+KH +IETT  +AKE++ LA+ M+ LGK G L + R+A A++  +DV+ KLF E+  RY D+ GGYTR++++  R GD APM  IE V
Sbjct:    3 YRKLGRLAGHRKMMLRNIVTSLLKHGKIETTELRAKELKSLAEKMITLGKRGDLHSRRQALAYLLDEDVVTKLFKEIGPRYADKNGGYTRIVKTGFRQGDGAPMVLIELV 112          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_HAMD5 (50S ribosomal protein L17 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M S LV+HE I+TTV KAKE+RR+ + ++ L K  S+   R A A +R +D++ KLF EL  R+  RAGGYTR+L+   R GD AP+AYIE +DR+
Sbjct:    8 RQLNRNSSHRRAMFRNMASSLVRHEIIKTTVPKAKELRRVVEPLITLAKTDSVANRRLAFARIRDNDIVVKLFNELGPRFVSRAGGYTRILKCGSRAGDNAPVAYIELLDRS 119          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_SHEAM4.536e-2551.3550S ribosomal protein L17 OS=Shewanella amazonensi... [more]
RL17_SERP54.536e-2550.8950S ribosomal protein L17 OS=Serratia proteamacula... [more]
RL17_RHOP24.536e-2550.0050S ribosomal protein L17 OS=Rhodopseudomonas palu... [more]
RL17_PROMH4.536e-2551.3350S ribosomal protein L17 OS=Proteus mirabilis (st... [more]
RL17_KLEP74.536e-2550.8950S ribosomal protein L17 OS=Klebsiella pneumoniae... [more]
RL17_KLEP34.536e-2550.8950S ribosomal protein L17 OS=Klebsiella pneumoniae... [more]
RL17_FUSNN4.536e-2548.1850S ribosomal protein L17 OS=Fusobacterium nucleat... [more]
RL17_POLSJ5.925e-2552.2550S ribosomal protein L17 OS=Polaromonas sp. (stra... [more]
RL17_MOOTA5.925e-2550.0050S ribosomal protein L17 OS=Moorella thermoacetic... [more]
RL17_HAMD55.925e-2550.8950S ribosomal protein L17 OS=Hamiltonella defensa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
back to top