CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALTI (50S ribosomal protein L17 OS=Salmonella typhi GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALSV (50S ribosomal protein L17 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALPK (50S ribosomal protein L17 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALPC (50S ribosomal protein L17 OS=Salmonella paratyphi C (strain RKS4594) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALPB (50S ribosomal protein L17 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALPA (50S ribosomal protein L17 OS=Salmonella paratyphi A GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALNS (50S ribosomal protein L17 OS=Salmonella newport (strain SL254) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALHS (50S ribosomal protein L17 OS=Salmonella heidelberg (strain SL476) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALG2 (50S ribosomal protein L17 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALEP (50S ribosomal protein L17 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_SALTI7.738e-2549.1250S ribosomal protein L17 OS=Salmonella typhi GN=r... [more]
RL17_SALSV7.738e-2549.1250S ribosomal protein L17 OS=Salmonella schwarzeng... [more]
RL17_SALPK7.738e-2549.1250S ribosomal protein L17 OS=Salmonella paratyphi ... [more]
RL17_SALPC7.738e-2549.1250S ribosomal protein L17 OS=Salmonella paratyphi ... [more]
RL17_SALPB7.738e-2549.1250S ribosomal protein L17 OS=Salmonella paratyphi ... [more]
RL17_SALPA7.738e-2549.1250S ribosomal protein L17 OS=Salmonella paratyphi ... [more]
RL17_SALNS7.738e-2549.1250S ribosomal protein L17 OS=Salmonella newport (s... [more]
RL17_SALHS7.738e-2549.1250S ribosomal protein L17 OS=Salmonella heidelberg... [more]
RL17_SALG27.738e-2549.1250S ribosomal protein L17 OS=Salmonella gallinarum... [more]
RL17_SALEP7.738e-2549.1250S ribosomal protein L17 OS=Salmonella enteritidi... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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