CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALDC (50S ribosomal protein L17 OS=Salmonella dublin (strain CT_02021853) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALCH (50S ribosomal protein L17 OS=Salmonella choleraesuis GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SALA4 (50S ribosomal protein L17 OS=Salmonella agona (strain SL483) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_MANSM (50S ribosomal protein L17 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            R+LNR + HR +M R M S LV HE I+TT+ KAKE+RR+ + ++ L KE S+   R A A  R  + + KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR
Sbjct:    8 RQLNRNSSHRQAMFRNMASSLVSHEIIKTTLPKAKELRRVVEPLITLAKEDSVANRRLAFARTRNIETVAKLFNELGPRFAQRAGGYTRILKCGFRAGDNAPMAYIELVDR 118
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ESCF3 (50S ribosomal protein L17 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOUT (50S ribosomal protein L17 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOSM (50S ribosomal protein L17 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOSE (50S ribosomal protein L17 OS=Escherichia coli (strain SE11) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOLU (50S ribosomal protein L17 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOLI (50S ribosomal protein L17 OS=Escherichia coli (strain K12) GN=rplQ PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_SALDC7.738e-2549.1250S ribosomal protein L17 OS=Salmonella dublin (st... [more]
RL17_SALCH7.738e-2549.1250S ribosomal protein L17 OS=Salmonella choleraesu... [more]
RL17_SALA47.738e-2549.1250S ribosomal protein L17 OS=Salmonella agona (str... [more]
RL17_MANSM7.738e-2552.2550S ribosomal protein L17 OS=Mannheimia succinicip... [more]
RL17_ESCF37.738e-2549.1250S ribosomal protein L17 OS=Escherichia fergusoni... [more]
RL17_ECOUT7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli (str... [more]
RL17_ECOSM7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli (str... [more]
RL17_ECOSE7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli (str... [more]
RL17_ECOLU7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O17:... [more]
RL17_ECOLI7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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