CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_GEOLS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=ispF PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36 Identity = 71/153 (46.41%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHG+D+HRL LI+GG+++P E+G HSD DVLLH + DA+LGAL + DIG+ FPD+DP +KGA S ++ V L+ GY +GNLDAT+I QRPK++P+ + +R N++ G + +N+ A T E + G I+AH V+LL Sbjct: 2 RIGHGYDVHRLVEDRKLIMGGVDIPWEKGLLGHSDADVLLHAIADALLGALAMGDIGKHFPDTDPAFKGADSMKLLEHVVGLIRTQGYAVGNLDATIIAQRPKMAPHIQAMRENVARACGVEVDRINVKATTEEGLGFTGTGEGISAHAVVLL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36 Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 FR+G GFD+H+L G PLIIGG+ +P+E+G HSD DVLLH V DA LGA+G DIG+ FPD+DP++K A S+ + L + GY + N D T+I Q+PKL+PY E +R ++ LL A+ + VN+ A T EK+ G IAA V+LL Sbjct: 2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKLAPYIEEMRAVIARLLEAERSQVNVKATTTEKLGFTGRGEGIAAQAVVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BACLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ispF PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36 Identity = 74/154 (48.05%), Postives = 104/154 (67.53%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 FR+G GFD+H+L G PLIIGGI +P+E+G HSD DVLLH + DA LGA+G DIG+ FPD+DP++K A S ++ ++ E GY +GNLD T+I Q+PK++PY E +R ++E L A+ + +N+ A T EK+ G IAA +LL Sbjct: 2 FRIGQGFDVHQLVEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLRHVWMIVKEKGYTLGNLDCTIIAQKPKMAPYIEDMRARIAEGLEAEISQINVKATTTEKLGFTGRAEGIAAQASVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RALSO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia solanacearum GN=ispF PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.947e-36 Identity = 73/156 (46.79%), Postives = 102/156 (65.38%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R+G G+D+H L G LI+GG+ +PH RG HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + EAGY++GN+DAT+I Q+PKL+P+ + NL+ LG P N+ A T+EK+ G I A +L+ Sbjct: 4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQKPKLAPHVPGMVANLAADLGIAPGRCNVKAKTNEKLGFEGREDGIVAQAAVLI 159
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RALEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ispF PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.947e-36 Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = 2 Query: 224 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 +PF RVG G+D+H L PG LI+GG+ +PH+RG HSD D LLH V DA+ GA L DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DAT+I Q PKL+P+ + NL+E LG N+ A T+EK+ G I A +LL Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAEDLGIARGRCNVKAKTNEKLGFEGRQEGIVAQAAVLL 159
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PORG3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ispF PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.947e-36 Identity = 70/155 (45.16%), Postives = 104/155 (67.10%), Query Frame = 2 Query: 227 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 PFR+G GFD+HRL GYPL +GG+ + H +G E HSD DVL+H + DA+LGA L DIG FP SDP++KG S + + A+ L+ GYE+GN+DAT+ ++PKL+P+ ++ L+E++ + + ++L A T EK+ G I+A+ V LL Sbjct: 4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARAMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATTTEKLGFTGREEGISAYAVALL 158
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SOLUE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Solibacter usitatus (strain Ellin6076) GN=ispF PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36 Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R G G+D+HR+ G +I+GG+ VP E G E HSD DVL H + DAILGA L DIG FPDSDP+WKG S VF++ A L + GY I N+D+T+IL+RPKL +++TIR L+E L D V++ T EKV +GE RS + ++ L Sbjct: 5 RTGLGWDVHRIATGRKMILGGVTVPCEFGLEGHSDADVLAHAITDAILGAAALGDIGMHFPDSDPRWKGCDSLVFLRHARDLATQKGYRIVNVDSTIILERPKLKDFRQTIRERLAETLELDVDRVSVKFKTAEKVGPVGEGRSAESQAIVTL 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispF PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36 Identity = 71/153 (46.41%), Postives = 104/153 (67.97%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S V ++ V ++D G+++GN+DAT++ Q PK++P+ ET+R ++ L + VN+ A T EK+ G IA H V LL Sbjct: 2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRVLLRHVVGIVDNKGWKVGNVDATIVAQAPKMAPHIETMRQQIAADLQVELDQVNVKATTEEKLGFTGREEGIAVHAVALL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BRAHW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=ispF PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36 Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G+G+D H LI+ GI +P+E G + HSD D ++H ++D+ILGAL L DIG FPD+D K+KG S V +++ V +M+E YEI N D T+IL++PKL Y +T+R NLS++L D V++ A T+EK+DS+G IA H V LL Sbjct: 2 RIGYGYDSHAFAENRKLILSGIEIPYELGLKGHSDADAVIHALIDSILGALALGDIGSHFPDNDSKYKGISSIVLLEKTVSIMEEKNYEISNTDITIILEKPKLRNYIDTMRENLSKILKTDIENVSIKAKTNEKMDSIGRGEGIAVHCVSLL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PECCP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ispF PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36 Identity = 74/153 (48.37%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H+ PL+IGG+ +P+ +G AHSDGDV+LH V DA+LGA L DIG++FPD+DP +KGA S ++EA R ++E GY++GNLD T+I Q PK++P+ +R NL+E L VN+ A T E++ G IA V LL Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINEKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAEDLLCHMDDVNVKATTTEQLGFTGRGEGIACEAVALL 154 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |