CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELP2 (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain P12) GN=ispDF PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++L A T EK+  +G+   +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 392          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_BARHE (Bifunctional enzyme ispD/ispF OS=Bartonella henselae GN=ispDF PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 59/147 (40.14%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G+G+D+H  E G  LI+ GI +P  +    HSD DV LH + DA+L   G  DIG  FP SDP+W+   S +F++ A+ ++ +AG  I N+D TLI + PK+ PY+  +  NL  +L   P  +++ A T+EK+  +G    IAA
Sbjct:  237 RTGNGYDVHSFEEGNSLILCGIKIPFHKKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDPQWQNVSSEIFLRHALDIVKQAGGRIANVDITLIAEEPKIGPYRHAMVGNLMNMLTILPDRISIKATTNEKLGFIGRGEGIAA 383          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPJ (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori J99 GN=ispDF PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++L A T EK+  +G+   +
Sbjct:  252 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELLEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 395          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPH (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain HPAG1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DA+LGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++L A T EK+  +G+   +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAVLGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 392          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMC5 (Bifunctional enzyme ispD/ispF OS=Campylobacter curvus (strain 525.92) GN=ispDF PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            G GFD H  E G  L + G  + +E G +AHSDGDV LH + DAILGA GL DIG++FPD+D ++KG  S + ++EA + +   G+E+ N D T++ +RPK+S +K  +  N++  L   P  +N+ A T EK+  +G    IA
Sbjct:  214 GIGFDAHEFERGRELWLCGEKIEYEFGLKAHSDGDVALHALTDAILGAAGLGDIGELFPDTDAEFKGISSLLLLQEAYKKVQSVGFELVNADITIMAERPKISKFKRKMEANIAGALNLAPNRINVKATTTEKLGFVGRGEGIA 357          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RHOS5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=ispF PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.548e-28
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            +  R G+GFD+H   PG  + + G+ VPH RG   HSD DV +H + DAI GAL   DIG  FP SDP+WKGA S +F++ A+  +   G+ + N D TLI +RPK+ P    +R  L+ ++G +   +++ A T EK+   G    IA
Sbjct:    1 MDIRTGNGFDVHAFGPGDHVWLCGVRVPHHRGLIGHSDADVGMHALTDAIYGALAEGDIGVHFPPSDPQWKGAASRIFLEHAMGRIAARGFTLANCDVTLICERPKIGPMAPAMREALAAIMGVEVGRISVKATTSEKLGFTGREEGIA 149          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PELTS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ispF PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.548e-28
Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G+D+H+L  G PL++GG+++P  +G   HSD DVL H V+DA+LGA G  DIG+ FPD+D ++KG  S   +     ++   G  + N+D+ ++ Q PKLSP+ E ++  ++  L   P+ V++ A T E +   G+   IAA+ V L+
Sbjct:    2 RVGFGYDVHKLVEGRPLVLGGVSIPFVKGLLGHSDADVLAHAVMDALLGAAGAGDIGRHFPDNDGRYKGISSMKLLARVGDILSRQGLAVVNIDSVVVAQGPKLSPFIEEMQKRMAGALQIQPSQVSVKATTTEGLGFAGKGEGIAAYAVALV 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELAH (Bifunctional enzyme ispD/ispF OS=Helicobacter acinonychis (strain Sheeba) GN=ispDF PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.548e-28
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH ++DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++L A T EK+  +G+   +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAMIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGQQEGL 392          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMC1 (Bifunctional enzyme ispD/ispF OS=Campylobacter concisus (strain 13826) GN=ispDF PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.548e-28
Identity = 61/145 (42.07%), Postives = 90/145 (62.07%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            VG GFD+H  E G PL++ G  + +E G +AHSDGDV LH + DAILGA GL DIG++FPD+D K+K   S   ++EA + +   G+ + N D T++ Q+PKLS  K  +  N+++ L    + +N+ A T E +  +G    IA
Sbjct:  213 VGSGFDVHEFEKGRPLVLCGEKIDYEFGLKAHSDGDVALHALTDAILGAAGLGDIGELFPDTDDKFKDISSIYLLQEAYKRVQSVGFVLTNADITIMAQKPKLSKLKSKMEANIAQALNLSQSRINVKATTTEGLGFVGRCEGIA 357          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_THET8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ispF PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.328e-28
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHE 634
            R+G+G D HRLE G PL + G+ +P   G  AHSDGD  LH + DA+L A GL DIG +FPD+DP+W+G  S VF++EA+RL++  G ++      L L RPKL P+++ +  +LS LL      + LT  T E
Sbjct:    2 RIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAALHALTDALLSAYGLGDIGLLFPDTDPRWRGERSEVFLREALRLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLLRLPQDRIGLTFKTSE 135          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_HELP21.494e-2842.36Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_BARHE1.494e-2840.14Bifunctional enzyme ispD/ispF OS=Bartonella hensel... [more]
ISPDF_HELPJ1.951e-2842.36Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_HELPH1.951e-2841.67Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_CAMC51.951e-2842.36Bifunctional enzyme ispD/ispF OS=Campylobacter cur... [more]
ISPF_RHOS52.548e-2840.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELTS2.548e-2839.222-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_HELAH2.548e-2841.67Bifunctional enzyme ispD/ispF OS=Helicobacter acin... [more]
ISPDF_CAMC12.548e-2842.07Bifunctional enzyme ispD/ispF OS=Campylobacter con... [more]
ISPF_THET83.328e-2845.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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