CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BLOPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Blochmannia pennsylvanicus (strain BPEN) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 59/153 (38.56%), Postives = 96/153 (62.75%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+GFD+H+     PL IGG+++P  +G +AHSDGDV++H ++DA+LGA    DIG +FPD+D K+    S   ++ A   +   G+ + N+D T+ILQ PK++ Y   ++ +LS+ L    T +N+ A T + +  +G +  IA   V+LL
Sbjct:    3 RIGYGFDVHQFGGCRPLTIGGVSIPCMKGIKAHSDGDVMMHSLIDALLGAACCGDIGSMFPDTDAKYNNIDSRKLLRIAWEKITMQGFLLENIDITVILQIPKINTYIYQMKHHLSQDLNCSVTSINIKATTTDTLGYIGRSEGIACIAVVLL 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SACD2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 59/153 (38.56%), Postives = 89/153 (58.17%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G D+H    G  ++IGG+ +P+ERG  AHSDGDVLLH + DA+LGA  L DIG+ FPD+D  +K A S   ++     +   GY + N D T++ Q PK++P+   +R  ++E L      +N+ A T E++   G    I A   +L+
Sbjct:    2 RIGQGVDVHAFGDGDKIVIGGVVIPYERGLVAHSDGDVLLHALCDALLGAAALGDIGKHFPDTDSAYKNACSRTLLRMVYSKLKAKGYSLVNADMTIVAQAPKMAPHISDMRAKIAEDLDTHIDNINVKATTTEQLGFNGRKEGITALATVLI 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJD (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ispDF PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA  L DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N+ A T EK+  +G    +A
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAVLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEGMA 356          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=ispF PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 62/159 (38.99%), Postives = 93/159 (58.49%), Query Frame = 2
Query:  230 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVIL 688
            F+VG G+D+H+ +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D  WK   S  F+ EA +   E GY I N D T+I ++PK+ P+   ++  ++ L+  DP+ +N+ A T EK+  LG    IAA  ++L
Sbjct:   10 FKVGIGYDVHKFDNTCYNDANTFITICGIKINYHKKIIAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNTWKNIKSDYFLIEAQKKAQEKGYSISNADITIICEQPKIMPHALEMQEYIANLICIDPSCINVKATTTEKLGFLGRKEGIAAQAIVL 168          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia canis (strain Jake) GN=ispF PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  230 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVIL 688
            F+VG G+D+H+ +          + I GI + H +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A S  F+ EA     E GY I N D  +I ++PK+ P+   ++  ++ L+  D + +N+ A T EK+  LG    IAA  ++L
Sbjct:   10 FKVGIGYDVHKFDNIEYDATNTFITICGIKINHHKKIVAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNKWKDAKSDYFLIEAKNKAQEKGYYISNADIIIICEQPKIMPHALKMQEYIANLIKIDTSCINVKATTTEKLGFLGRKEGIAAQAIVL 168          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CELJU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=ispF PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 55/156 (35.26%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R+G G+D+H    G  ++IGG+ +PH  G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+D +++ A S   ++     + + G+++ N D T++ Q P+++ Y   +   ++  L +  + +N+ A T E++   G    IA + V+LL
Sbjct:    1 MSMRIGQGYDVHAFGEGEKIVIGGVVIPHHHGLVAHSDGDVLLHALCDALLGAVALGDIGKHFPDTDMQYRNADSRSLLRMVYAKVSQHGWKLANADMTIVAQAPRMASYIPHMVEVIASDLQSSASQINVKATTSERLGFTGREEGIACYAVVLL 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_SULDN (Bifunctional enzyme ispD/ispF OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=ispDF PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 57/143 (39.86%), Postives = 86/143 (60.14%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            G GFD+H  +    + +GGI +  E G  AHSDGDV +H ++DA+LGA G+ DIG +FPD+D K+KGA S   +   V  +   G+ I N+D T+  ++P++  YK  +R  +S +LG D   VN+ A T EK+  +G    +
Sbjct:  228 GVGFDVHAFDDKGEMFLGGIKIDSEYGFLAHSDGDVAIHALIDALLGAAGMGDIGMMFPDNDVKYKGADSKELLGTLVTKLRHFGFVIVNVDITIAAEKPRIGNYKMAMRKKISSILGIDAQRVNIKATTTEKLGFIGRGEGV 370          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELHP (Bifunctional enzyme ispD/ispF OS=Helicobacter hepaticus GN=ispDF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 54/150 (36.00%), Postives = 86/150 (57.33%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685
            +G+G D+H+ E    + +GG+ +    G +AHSDGDV+LH + DAILGA+G  DIG+ FPD+D  +K A S + + E        GYE+ N D ++I Q PK++PYK  +R  ++ +L      +N+ A T E +  +G    +     +
Sbjct:  225 IGNGIDVHQFEKNKQMWLGGVEIESPFGFKAHSDGDVVLHALSDAILGAIGGGDIGEWFPDTDETYKNADSKMMLSEIYTFAQSVGYELYNADISIIAQTPKIAPYKSAMRECIARILRVPNAHINIKATTTEGLGFVGREEGVCVEACV 374          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_DESMR (Bifunctional enzyme ispD/ispF OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = 2
Query:  239 GHGFDLHRL--------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685
            G+G+D+HR         +P  P+ +GG  +       AHSDGDVLLH + DA+LG +   DIG++FPDS+P +    S VF+ EA+      G  I ++D T+I Q PK+SP+ E IR N++ LLG +   VNL A T E +   GE + I A  ++
Sbjct:  238 GYGYDVHRYADPRNPGKQPPRPMKLGGFPILGAPEVLAHSDGDVLLHALTDAVLGCVAGGDIGRLFPDSNPDFDNMASGVFLSEALLAAKAKGLTITHVDLTIIAQIPKISPHAEAIRLNVAALLGLNKEQVNLKATTEEGLGFTGEKKGIKAVALV 394          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_SPHWW (Bifunctional enzyme ispD/ispF OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 58/150 (38.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTV 682
            R   GFD+H    G  + +GG+ + H+R    HSD DV LH + DA+LG +   DIG  FP SD +WKGA S++F+  A  L+  AG  +  +D T+I + PK+ P++  IR  ++ LLG     V++ A T E++   G    IAA  V
Sbjct:  225 RTAMGFDVHGFTAGDGVQLGGVRIAHDRALAGHSDADVALHALTDALLGTIAAGDIGSHFPPSDQRWKGADSAMFLAHARDLVAAAGGIVDFVDLTIICEAPKVGPHRAAIRDRIAALLGLTAGQVSVKATTTERLGFTGRREGIAAQAV 374          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_BLOPB8.197e-2738.562-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SACD21.071e-2638.562-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMJD1.071e-2639.58Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPF_EHRCR1.398e-2638.992-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRCJ1.398e-2639.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CELJU1.398e-2635.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SULDN1.826e-2639.86Bifunctional enzyme ispD/ispF OS=Sulfurimonas deni... [more]
ISPDF_HELHP1.546e-2536.00Bifunctional enzyme ispD/ispF OS=Helicobacter hepa... [more]
ISPDF_DESMR1.546e-2540.13Bifunctional enzyme ispD/ispF OS=Desulfovibrio mag... [more]
ISPDF_SPHWW2.019e-2538.67Bifunctional enzyme ispD/ispF OS=Sphingomonas witt... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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