CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RHOOB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispF PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22 Identity = 54/153 (35.29%), Postives = 83/153 (54.25%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+H +E G P + G+ E GC HSDGDV +H + DA+L A GL D+G +F P+W G + + E RL+++ + + N +I RPK+ P + + LS++LGA V+++A T + + G IAA L+ Sbjct: 2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEQDDFGVANAAVQVIGNRPKIGPRRNEAQKVLSDILGAP---VSVSATTTDGLGLTGRGEGIAAMATALV 151
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_NOCSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ispF PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22 Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHE-RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+HRL G PL + G++ P E +G E HSD DV H DA+ A GL D+G F +DP W GA + ++E R + AG+EIGN+ +I RP+L + T LS +GA V+++A T + + G +AA L+ Sbjct: 6 RVGIGTDVHRLVDGVPLHLAGLHWPDEPQGLEGHSDADVAAHAACDALFSAAGLGDLGSNFGTADPAWAGASGAALLEETARRVRAAGFEIGNVAVQVIGNRPRLGGRRAEAETALSAAVGAP---VSVSATTADGLGLTGRGEGVAAIATALV 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae GN=ispF PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG GFD+H EPG P + G+ P GC HSDGDV +H + DA+L A G DIG +F DP+W+ + ++ V L+ GYE+ N +I RPK+ P + + LS LL A V++ A T E + G ++A L+ Sbjct: 6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRAP---VSVAATTTEGLGLTGRGEGLSAIATALV 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae (strain Br4923) GN=ispF PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG GFD+H EPG P + G+ P GC HSDGDV +H + DA+L A G DIG +F DP+W+ + ++ V L+ GYE+ N +I RPK+ P + + LS LL A V++ A T E + G ++A L+ Sbjct: 6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRAP---VSVAATTTEGLGLTGRGEGLSAIATALV 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CORU7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispF PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22 Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 RVG D H++EPG P + G+ GCE HSDGDV+ H +VDA+L A GL D+G ++ G I E +L+ E G+ IGN+ A +I RPK+ P +E L+EL+GA V+++A T +K+ G +AA Sbjct: 8 RVGIASDAHQVEPGKPCWMAGLLFEDADGCEGHSDGDVVSHVIVDALLSASGLGDLGSFVGVGRKEYDGVSGERLITECRQLLAENGFTIGNVAAQMIGNRPKMGPRREEAERRLTELVGAP---VSVSATTTDKMGFTGRGEGVAA 151
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ACIC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=ispF PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21 Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+H P PL + G++ P E G HSD DV++H + +A+L A GL D+G F ++P+W+ A + + E VRL+ +AGY +GN L+ +RPKL + L+E +GA + L+A T + + LG +AA L+ Sbjct: 8 RVGIGVDVHPFSPDRPLWLAGLHWPGEPGLAGHSDADVVIHALCNALLSAAGLGDLGTQFGTAEPEWRDAAGTRLLTETVRLVRDAGYAVGNAAVQLLGERPKLRERRTEAEQLLTETVGAP---IALSAATTDGLGFLGRRDGLAAVATALV 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RHOE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ispF PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21 Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+H +E G P + G+ GC HSDGDV +H + DA+L A GL D+G +F P+W G + + E RL++E + +GN +I RPK+ P + + LS++LGA V+++A T + + G IAA L+ Sbjct: 2 RVGLGTDVHPIEVGRPCWMAGLLFEEADGCSGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWDGVSGARMLAEVRRLLEENQFTVGNAAVQVIGNRPKIGPRRGEAQKVLSDILGAP---VSVSATTTDGLGLTGRGEGIAAMATALV 151
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ispF PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21 Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+H +E G P + G+ E GCE HSDGDV H + DA+L A GL D+G +F P+W G + + L+ + G++IGN +I RPK+ P + + LS L+GA V+++A T + + G +AA L+ Sbjct: 6 RVGIGTDVHPIEEGKPCWLLGLLFSDENGCEGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWTGVSGAKMLSHVRDLLHDNGFQIGNAAVQVIGNRPKVGPRRAEAQELLSGLIGAP---VSVSATTTDGLGLTGRGEGLAAVATALV 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium paratuberculosis GN=ispF PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21 Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G G D+H ++PG P + G+ GC HSDGDV H + DA+L A GL D+G +F DP+W G + ++ L G+ +GN +I RPK+ P + + LSELLGA V++ A T + + G +AA L+ Sbjct: 6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAP---VSVAATTTDGLGLTGRGEGLAAIATALV 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21 Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G G D+H ++PG P + G+ GC HSDGDV H + DA+L A GL D+G +F DP+W G + ++ L G+ +GN +I RPK+ P + + LSELLGA V++ A T + + G +AA L+ Sbjct: 6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAP---VSVAATTTDGLGLTGRGEGLAAIATALV 155 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |