CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RHOOB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 54/153 (35.29%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+H +E G P  + G+    E GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL+++  + + N    +I  RPK+ P +   +  LS++LGA    V+++A T + +   G    IAA    L+
Sbjct:    2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEQDDFGVANAAVQVIGNRPKIGPRRNEAQKVLSDILGAP---VSVSATTTDGLGLTGRGEGIAAMATALV 151          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_NOCSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHE-RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+HRL  G PL + G++ P E +G E HSD DV  H   DA+  A GL D+G  F  +DP W GA  +  ++E  R +  AG+EIGN+   +I  RP+L   +    T LS  +GA    V+++A T + +   G    +AA    L+
Sbjct:    6 RVGIGTDVHRLVDGVPLHLAGLHWPDEPQGLEGHSDADVAAHAACDALFSAAGLGDLGSNFGTADPAWAGASGAALLEETARRVRAAGFEIGNVAVQVIGNRPRLGGRRAEAETALSAAVGAP---VSVSATTADGLGLTGRGEGVAAIATALV 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A    V++ A T E +   G    ++A    L+
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRAP---VSVAATTTEGLGLTGRGEGLSAIATALV 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae (strain Br4923) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A    V++ A T E +   G    ++A    L+
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRAP---VSVAATTTEGLGLTGRGEGLSAIATALV 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CORU7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            RVG   D H++EPG P  + G+      GCE HSDGDV+ H +VDA+L A GL D+G        ++ G      I E  +L+ E G+ IGN+ A +I  RPK+ P +E     L+EL+GA    V+++A T +K+   G    +AA
Sbjct:    8 RVGIASDAHQVEPGKPCWMAGLLFEDADGCEGHSDGDVVSHVIVDALLSASGLGDLGSFVGVGRKEYDGVSGERLITECRQLLAENGFTIGNVAAQMIGNRPKMGPRREEAERRLTELVGAP---VSVSATTTDKMGFTGRGEGVAA 151          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ACIC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+H   P  PL + G++ P E G   HSD DV++H + +A+L A GL D+G  F  ++P+W+ A  +  + E VRL+ +AGY +GN    L+ +RPKL   +      L+E +GA    + L+A T + +  LG    +AA    L+
Sbjct:    8 RVGIGVDVHPFSPDRPLWLAGLHWPGEPGLAGHSDADVVIHALCNALLSAAGLGDLGTQFGTAEPEWRDAAGTRLLTETVRLVRDAGYAVGNAAVQLLGERPKLRERRTEAEQLLTETVGAP---IALSAATTDGLGFLGRRDGLAAVATALV 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RHOE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+H +E G P  + G+      GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL++E  + +GN    +I  RPK+ P +   +  LS++LGA    V+++A T + +   G    IAA    L+
Sbjct:    2 RVGLGTDVHPIEVGRPCWMAGLLFEEADGCSGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWDGVSGARMLAEVRRLLEENQFTVGNAAVQVIGNRPKIGPRRGEAQKVLSDILGAP---VSVSATTTDGLGLTGRGEGIAAMATALV 151          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+H +E G P  + G+    E GCE HSDGDV  H + DA+L A GL D+G +F    P+W G   +  +     L+ + G++IGN    +I  RPK+ P +   +  LS L+GA    V+++A T + +   G    +AA    L+
Sbjct:    6 RVGIGTDVHPIEEGKPCWLLGLLFSDENGCEGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWTGVSGAKMLSHVRDLLHDNGFQIGNAAVQVIGNRPKVGPRRAEAQELLSGLIGAP---VSVSATTTDGLGLTGRGEGLAAVATALV 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium paratuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA    V++ A T + +   G    +AA    L+
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAP---VSVAATTTDGLGLTGRGEGLAAIATALV 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA    V++ A T + +   G    +AA    L+
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAP---VSVAATTTDGLGLTGRGEGLAAIATALV 155          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_RHOOB6.079e-2235.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_NOCSJ7.940e-2238.312-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLE7.940e-2237.252-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLB7.940e-2237.252-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORU77.940e-2238.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACIC11.354e-2136.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RHOE41.769e-2135.952-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA93.940e-2135.952-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCPA5.146e-2135.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA15.146e-2135.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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