CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_HYDS0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=ispF PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21 Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHE---KVDSL 649 +R+G G D H E G L +GG G + HSDGD LLH + DAILGAL DIG +FPD + K S F+ +A+ +M + Y I NLD +I +P +S ++ I +LS LL +++ A T E K DSL Sbjct: 2 YRIGIGQDAHYFEKGKKLYLGGEEFDIGYGLKGHSDGDALLHAITDAILGALAKTDIGTLFPDKSKENKNRNSVDFLNKALEIMYDMDYSIVNLDCNIIADKPNISSVRDKIIESLSRLLSIPKDNISIKAKTKEGYNKEDSL 144
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20 Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L+ GY IGN+ A L+ Q PK P +E + +SE++GA P ++ T H E R+ A V+ Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R G G D+H ++ PL + G++ P E G HSDGD + H + DA+L A GL DIG IF DP+ GA VF++ L+ +AGY I N+ ++ RPKLSP + LS +GA V+L T + + G +AA L+ Sbjct: 258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGAP---VSLAGTTTDGLGFTGRGDGVAAVATALV 407
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20 Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L++ G+ IGN+ A L+ Q PK P +E + +S+++GA P ++ T H E R+ A V+ Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20 Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 + R G G D+H+L G P+ + G++ P E G HSDGDV H + DA+L A GL DIG IF +DP+W GA + V L+ G+ I N+ ++ QRP+++ + L++ +GA V+++A T + + G +AA Sbjct: 2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGAP---VSVSATTTDHLGFTGRGEGVAA 149
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_COREF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium efficiens GN=ispF PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20 Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + + E L+ G+ IGN+ A L+ Q PK P +E + +S++LGA P ++ T H GE R+ A V+ Sbjct: 19 RVGIASDAHQIEAGKPCWIACLLFDGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLIEVRELLITRGFTIGNVAAQLVGQTPKFGPRREEAQQVISDILGA-PCFLSATTTDHMGFTGRGEGRAALATAVV 168
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FRASN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain EAN1pec) GN=ispF PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19 Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+H E G + + P E G HSDGDV H DA+L A G+ D+G +F P+W GA + + E RL+ E G+ IGN+ ++ RP+++ + + +S LGA VNL+A T + + G +AA L+ Sbjct: 8 RVGTGVDVHPFEQGRECWVACLLWPGETGLAGHSDGDVASHAACDALLTASGIGDLGAVFGTGRPEWSGASGAALLGETARLLAEGGWLIGNVAVQVVGNRPRMAARRVEAQEAMSAALGAP---VNLSATTTDGLGLTGRGEGLAAIATALV 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19 Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ AG+ IGN+ +I RP+++ +E + +S LGA V+L+A T + + G +AA L+ Sbjct: 8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGAS---VSLSATTTDGLGLTGRGEGLAAIATALV 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FRAAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ G+ IGN+ +I RP+++ +E + +S LGA V+L+A T + + G +AA L+ Sbjct: 8 RVGIGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHATCDALLTASCLGDLGKVFGTDRPEYAGASGAVLLAETARLLAVGGWVIGNVSVQVIGNRPRMAARREQAQAAMSAALGAS---VSLSATTTDGLGLTGRGEGLAAIATALV 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ARTCA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=ispF PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18 Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = 2 Query: 233 RVGHGFDLHRLEP---GYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R G G D+H L +GG+ P ERG HSDGD + H DA+ A G+ D+G F P++ GA + EA R++ AG+EIGN+ + RPK P +E + LS+ GA V++TA T + + G I+A L+ Sbjct: 5 RTGIGVDVHAFAAEGEARQLWVGGLLWPGERGLAGHSDGDPVAHAAADALFSAAGIGDLGTHFGTDRPEFAGASGVTLLAEAARIVRAAGFEIGNIAVQFVANRPKFGPRREESQQVLSDAAGAP---VSVTATTSDGLGFTGRGEGISAVATALV 157 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |