CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_HYDS0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHE---KVDSL 649
            +R+G G D H  E G  L +GG       G + HSDGD LLH + DAILGAL   DIG +FPD   + K   S  F+ +A+ +M +  Y I NLD  +I  +P +S  ++ I  +LS LL      +++ A T E   K DSL
Sbjct:    2 YRIGIGQDAHYFEKGKKLYLGGEEFDIGYGLKGHSDGDALLHAITDAILGALAKTDIGTLFPDKSKENKNRNSVDFLNKALEIMYDMDYSIVNLDCNIIADKPNISSVRDKIIESLSRLLSIPKDNISIKAKTKEGYNKEDSL 144          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L+   GY IGN+ A L+ Q PK  P +E  +  +SE++GA P  ++ T   H       E R+  A  V+
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R G G D+H ++   PL + G++ P E G   HSDGD + H + DA+L A GL DIG IF   DP+  GA   VF++    L+ +AGY I N+   ++  RPKLSP +      LS  +GA    V+L   T + +   G    +AA    L+
Sbjct:  258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGAP---VSLAGTTTDGLGFTGRGDGVAAVATALV 407          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L++  G+ IGN+ A L+ Q PK  P +E  +  +S+++GA P  ++ T   H       E R+  A  V+
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            +  R G G D+H+L  G P+ + G++ P E  G   HSDGDV  H + DA+L A GL DIG IF  +DP+W GA     +   V L+   G+ I N+   ++ QRP+++  +      L++ +GA    V+++A T + +   G    +AA
Sbjct:    2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGAP---VSVSATTTDHLGFTGRGEGVAA 149          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_COREF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium efficiens GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  + E   L+   G+ IGN+ A L+ Q PK  P +E  +  +S++LGA P  ++ T   H      GE R+  A  V+
Sbjct:   19 RVGIASDAHQIEAGKPCWIACLLFDGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLIEVRELLITRGFTIGNVAAQLVGQTPKFGPRREEAQQVISDILGA-PCFLSATTTDHMGFTGRGEGRAALATAVV 168          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FRASN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain EAN1pec) GN=ispF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+H  E G    +  +  P E G   HSDGDV  H   DA+L A G+ D+G +F    P+W GA  +  + E  RL+ E G+ IGN+   ++  RP+++  +   +  +S  LGA    VNL+A T + +   G    +AA    L+
Sbjct:    8 RVGTGVDVHPFEQGRECWVACLLWPGETGLAGHSDGDVASHAACDALLTASGIGDLGAVFGTGRPEWSGASGAALLGETARLLAEGGWLIGNVAVQVVGNRPRMAARRVEAQEAMSAALGAP---VNLSATTTDGLGLTGRGEGLAAIATALV 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+  AG+ IGN+   +I  RP+++  +E  +  +S  LGA    V+L+A T + +   G    +AA    L+
Sbjct:    8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGAS---VSLSATTTDGLGLTGRGEGLAAIATALV 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FRAAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+   G+ IGN+   +I  RP+++  +E  +  +S  LGA    V+L+A T + +   G    +AA    L+
Sbjct:    8 RVGIGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHATCDALLTASCLGDLGKVFGTDRPEYAGASGAVLLAETARLLAVGGWVIGNVSVQVIGNRPRMAARREQAQAAMSAALGAS---VSLSATTTDGLGLTGRGEGLAAIATALV 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ARTCA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=ispF PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  233 RVGHGFDLHRLEP---GYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R G G D+H          L +GG+  P ERG   HSDGD + H   DA+  A G+ D+G  F    P++ GA     + EA R++  AG+EIGN+    +  RPK  P +E  +  LS+  GA    V++TA T + +   G    I+A    L+
Sbjct:    5 RTGIGVDVHAFAAEGEARQLWVGGLLWPGERGLAGHSDGDPVAHAAADALFSAAGIGDLGTHFGTDRPEFAGASGVTLLAEAARIVRAAGFEIGNIAVQFVANRPKFGPRREESQQVLSDAAGAP---VSVTATTSDGLGFTGRGEGISAVATALV 157          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_HYDS06.721e-2139.862-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORGL1.146e-2037.092-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CLAM31.146e-2037.25Bifunctional enzyme ispD/ispF OS=Clavibacter michi... [more]
ISPF_CORGB1.956e-2035.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROAC7.431e-2034.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_COREF7.431e-2036.422-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASN4.817e-1934.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASC4.817e-1935.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRAAA1.401e-1834.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ARTCA2.391e-1834.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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