CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_LISIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Listeria innocua GN=ispF PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36 Identity = 71/153 (46.41%), Postives = 106/153 (69.28%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G G+D+H+L+ LIIGGI +P+E+G HSD DVLLH + DAI+GA+G DIG FPD+D +K A S+ + E R ++ G+++GNLDAT+I ++PK++PY E ++ ++ELL A+P+ VN+ A T EK+ G IA+ V+LL Sbjct: 3 RIGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFPDTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAEKPKMAPYVELMKRRIAELLHAEPSQVNVKATTTEKLGFTGREEGIASLAVVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ACAM1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispF PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36 Identity = 65/153 (42.48%), Postives = 106/153 (69.28%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G+G+D+H+L G PLI+GG+ + H G + HSD DVL H ++DA+LGAL L DIG FP +DPKW GA S +++ +L+ + G++IGN+D+ ++ +RPKL P+ E +R +S++L P ++ + A T+EK+ +G+ + I ++ V LL Sbjct: 5 RIGNGYDIHQLVEGRPLILGGVQIEHSLGLKGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPKWAGADSLKLLEQVHQLILDRGWQIGNIDSVVVAERPKLKPHIEAMRDRISQVLNLSPELIGIKATTNEKLGPVGQEQGICSYAVALL 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_THETN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36 Identity = 73/153 (47.71%), Postives = 102/153 (66.67%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 RVG G+D+HR E G L++GGI +P E+G + HSDGDVL+H ++D ILGA GL DIG+ FPD+D +K S + +K + L+ E Y + N+D ++ +RPKLSPYK+ IRT+L+ELLG VN+ A T E + G I A+ V+LL Sbjct: 5 RVGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFPDTDVAYKEVDSKILLKRVLELVSE-HYVVNNVDCIVVTERPKLSPYKDRIRTSLAELLGVSKERVNVKAKTEEGLGFTGREEGIKAYAVVLL 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHEPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36 Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R+GHGFD+H+ PLI+GGI VP+E G AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++ +L + GY + NLD T+I Q PK++P+ E IR L+E L ++ +N+ A T EK+ G IA V+L+ Sbjct: 1 MKIRIGHGFDVHKFGGEPPLILGGITVPYEVGLIAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYKLAMDMGYSLSNLDVTVIAQAPKMAPHIEAIRAVLAEDLASEICDINVKATTTEKLGFTGRKEGIAVEAVVLM 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36 Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H+ PLI+GG+ VP++ G AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++ +L + GY +GNLD T+I Q PK+ P+ + IR LS L +D +N+ A T EK+ G IA V+L+ Sbjct: 4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESDIEAINVKATTTEKLGFTGRKEGIAVEAVVLM 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36 Identity = 73/153 (47.71%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H+ PL+IGG+ +P+ +G AHSDGDV+LH V DA+LGA L DIG++FPD+DP +KGA S ++EA R +++ GY++GNLD T+I Q PK++P+ +R NL+E L VN+ A T E++ G IA V LL Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAEDLQCHMDDVNVKATTTEQLGFTGRGEGIACEAVALL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36 Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 +PFRVG G+D+H L G PLIIGG+ +PH G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV + AG+ N+DAT+ Q PK+ P+ + N++ G D VN+ A T+E + LG IAA V LL Sbjct: 3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQAPKIGPHAGAMVANIAADAGIDSASVNIKAKTNEGLGYLGRKEGIAATVVALL 158
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEMY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispF PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36 Identity = 71/153 (46.41%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA+ L DIG+ FPD+DP +KGA S ++ + L+ GY +GN+DAT+I Q PK++P+ +++R ++E LG + VN+ A T EK+ G IA H V LL Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKFGLVAHSDGDVLLHALSDALLGAVALGDIGKHFPDTDPTFKGADSRALLRHVMSLVRGKGYAVGNVDATIIAQAPKMAPHIQSMRERIAEDLGVELDQVNVKATTTEKLGFTGREEGIAVHAVALL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PORGI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis GN=ispF PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36 Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 2 Query: 227 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 PFR+G GFD+HRL GYPL +GG+ + H +G E HSD DVL+H + DA+LGA L DIG FP SDP++KG S + + + L+ GYE+GN+DAT+ ++PKL+P+ ++ L+E++ + + ++L A T EK+ G I+A+ V LL Sbjct: 4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATTTEKLGFTGREEGISAYAVALL 158
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ERWT9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ispF PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36 Identity = 73/153 (47.71%), Postives = 100/153 (65.36%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H PLIIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+D +KGA S ++EA+R + + GY +GN+D T+I Q PK+ P+ +R N++E LG VN+ A T EK+ G IA V LL Sbjct: 2 RIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDEAYKGADSRELLREALRQIAQKGYRVGNVDVTIIAQAPKMLPHAPQMRINIAEDLGIHMDEVNVKATTTEKLGFTGRGEGIACEAVALL 154 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |