CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_LISIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Listeria innocua GN=ispF PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36
Identity = 71/153 (46.41%), Postives = 106/153 (69.28%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G+D+H+L+    LIIGGI +P+E+G   HSD DVLLH + DAI+GA+G  DIG  FPD+D  +K A S+  + E  R ++  G+++GNLDAT+I ++PK++PY E ++  ++ELL A+P+ VN+ A T EK+   G    IA+  V+LL
Sbjct:    3 RIGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFPDTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAEKPKMAPYVELMKRRIAELLHAEPSQVNVKATTTEKLGFTGREEGIASLAVVLL 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ACAM1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispF PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36
Identity = 65/153 (42.48%), Postives = 106/153 (69.28%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+G+D+H+L  G PLI+GG+ + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DPKW GA S   +++  +L+ + G++IGN+D+ ++ +RPKL P+ E +R  +S++L   P ++ + A T+EK+  +G+ + I ++ V LL
Sbjct:    5 RIGNGYDIHQLVEGRPLILGGVQIEHSLGLKGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPKWAGADSLKLLEQVHQLILDRGWQIGNIDSVVVAERPKLKPHIEAMRDRISQVLNLSPELIGIKATTNEKLGPVGQEQGICSYAVALL 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_THETN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 73/153 (47.71%), Postives = 102/153 (66.67%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVG G+D+HR E G  L++GGI +P E+G + HSDGDVL+H ++D ILGA GL DIG+ FPD+D  +K   S + +K  + L+ E  Y + N+D  ++ +RPKLSPYK+ IRT+L+ELLG     VN+ A T E +   G    I A+ V+LL
Sbjct:    5 RVGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFPDTDVAYKEVDSKILLKRVLELVSE-HYVVNNVDCIVVTERPKLSPYKDRIRTSLAELLGVSKERVNVKAKTEEGLGFTGREEGIKAYAVVLL 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHEPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ispF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R+GHGFD+H+     PLI+GGI VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY + NLD T+I Q PK++P+ E IR  L+E L ++   +N+ A T EK+   G    IA   V+L+
Sbjct:    1 MKIRIGHGFDVHKFGGEPPLILGGITVPYEVGLIAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYKLAMDMGYSLSNLDVTVIAQAPKMAPHIEAIRAVLAEDLASEICDINVKATTTEKLGFTGRKEGIAVEAVVLM 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I Q PK+ P+ + IR  LS  L +D   +N+ A T EK+   G    IA   V+L+
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESDIEAINVKATTTEKLGFTGRKEGIAVEAVVLM 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 73/153 (47.71%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H+     PL+IGG+ +P+ +G  AHSDGDV+LH V DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +++ GY++GNLD T+I Q PK++P+   +R NL+E L      VN+ A T E++   G    IA   V LL
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAEDLQCHMDDVNVKATTTEQLGFTGRGEGIACEAVALL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +PFRVG G+D+H L  G PLIIGG+ +PH  G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV  +  AG+   N+DAT+  Q PK+ P+   +  N++   G D   VN+ A T+E +  LG    IAA  V LL
Sbjct:    3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQAPKIGPHAGAMVANIAADAGIDSASVNIKAKTNEGLGYLGRKEGIAATVVALL 158          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEMY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 71/153 (46.41%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+DP +KGA S   ++  + L+   GY +GN+DAT+I Q PK++P+ +++R  ++E LG +   VN+ A T EK+   G    IA H V LL
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKFGLVAHSDGDVLLHALSDALLGAVALGDIGKHFPDTDPTFKGADSRALLRHVMSLVRGKGYAVGNVDATIIAQAPKMAPHIQSMRERIAEDLGVELDQVNVKATTTEKLGFTGREEGIAVHAVALL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PORGI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis GN=ispF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  227 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +   + L+   GYE+GN+DAT+  ++PKL+P+   ++  L+E++  + + ++L A T EK+   G    I+A+ V LL
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATTTEKLGFTGREEGISAYAVALL 158          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ERWT9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ispF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 73/153 (47.71%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H      PLIIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+D  +KGA S   ++EA+R + + GY +GN+D T+I Q PK+ P+   +R N++E LG     VN+ A T EK+   G    IA   V LL
Sbjct:    2 RIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDEAYKGADSRELLREALRQIAQKGYRVGNVDVTIIAQAPKMLPHAPQMRINIAEDLGIHMDEVNVKATTTEKLGFTGRGEGIACEAVALL 154          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_LISIN3.320e-3646.412-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACAM13.320e-3642.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THETN4.336e-3647.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEPA4.336e-3647.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHELP4.336e-3647.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWCT4.336e-3647.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORPD4.336e-3648.082-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEMY5.664e-3646.412-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PORGI5.664e-3644.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWT95.664e-3647.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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