CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PROM2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=ispF PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 70/156 (44.87%), Postives = 104/156 (66.67%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGI--NVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 FR+G+G+D+HRLE G LIIGG+ N P G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK S + + + + L+ + G+EI N+D+ ++ +RPK+ PY E ++ NLS+ L D + + + A T+EK+ G I+ H+V+LL Sbjct: 8 FRIGNGYDIHRLEIGRKLIIGGVKLNHPDNLGLDGHSDADVLSHSIMDALLGALSLGDIGKYFPPSDEKWKDVDSLILLSKVIDLVRKQGWEINNIDSVIVAERPKIKPYVEIMKRNLSKTLKIDDSFIGIKATTNEKLGPEGREEGISCHSVVLL 163
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FUSNN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=ispF PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 67/153 (43.79%), Postives = 106/153 (69.28%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G+G+D+H+L G L++GG+ VPH +G HSDGDVLLH + DAI+GALGL DIG FPD+D K S++ +K+ +M E Y+I NLD+ +++Q+PKL PY ++IR N++++L + ++N+ A T EK+ G+ + ++ V+LL Sbjct: 3 RIGNGYDVHKLVEGRKLMLGGVEVPHTKGVLGHSDGDVLLHAITDAIIGALGLGDIGLHFPDNDENLKDIDSAILLKKINNIMKEKNYKIVNLDSIIVMQKPKLRPYIDSIRDNIAKILEINSELINVKAKTEEKLGFTGDETGVKSYCVVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CLOD6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium difficile (strain 630) GN=ispF PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 68/153 (44.44%), Postives = 106/153 (69.28%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G G+D+H+L LIIGG+ +PH++G HSD DVL+H ++D+ILGAL L DIG+ FPD+D ++KGA S ++ L+ GY+IGN+D+T+I Q PK++PY E++R+N+S++L D +N+ A T E + G + IA+ ++ LL Sbjct: 2 RIGLGYDVHKLTEDRKLIIGGVEIPHDKGLLGHSDADVLIHAIMDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQSPKMAPYIESMRSNISKVLNTDIDNINIKATTEEGLGFTGAKQGIASQSICLL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_AZOVD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ispF PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHG+D+HR G + +GG+ +PH G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KG S V ++ V L+ E G+ +GN+DAT++ Q PK++P+ E +R +++E L VN+ A T EK+ G IA H V LL Sbjct: 2 RIGHGYDVHRFAEGDFVTLGGVRIPHRFGLLAHSDGDVLLHALCDALLGAAALGDIGRHFPDTDPRFKGVDSRVLLRHVVALVREKGWRVGNVDATIVAQAPKMAPHIERMRLSIAEDLQVGVEQVNVKATTTEKLGFTGREEGIAVHAVALL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ANAVT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispF PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 67/156 (42.95%), Postives = 103/156 (66.03%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R+G+G+D+HRL LI+GG+++PHE G HSD DVL H ++DA+LGAL L DIG FP +DP+W GA S V + + L+ G+ IGN+D+ ++ +RPKL P+ +T+R L+ +L +P + + A T+EK+ +G I A+ V+LL Sbjct: 3 MSIRIGNGYDIHRLVSDRALILGGVHIPHELGLLGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWAGADSLVLLNQVNELIRAQGWRIGNIDSVVVAERPKLKPHIKTMRDKLANVLQLEPNQIGVKATTNEKLGPVGREEGICAYAVVLL 158
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ALKMQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ispF PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685 RVG G+D+HRL G LI+GG+ +PHE+G HSD DVLLH + DA+LGA+ L DIG+ FPD+D K+KG S + E R++ E Y N+DAT+I Q PK++PY E +R N++E+LG VN+ A T E + +G IAA ++ Sbjct: 2 RVGIGYDVHRLVEGRKLIVGGVEIPHEKGLLGHSDADVLLHAIKDALLGAVALGDIGKHFPDTDEKYKGESSLYLLNEVGRMLAEKAYVANNIDATIIAQEPKMAPYIELMRRNIAEVLGIKVEQVNIKATTTEGIGFVGRGEGIAAQAIV 152
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispF PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35 Identity = 68/154 (44.16%), Postives = 102/154 (66.23%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 FR+G+G+D+HRL G PLI+GGI + H G + HSD DVL H ++DA+LGAL L DIG FP +DP+WKGA S + + +L+ + G+ IGNLD+ ++ ++PKL P+ +R L+++L +P + + A T+EK+ G I A+ V LL Sbjct: 4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTNEKLGPTGREEGICAYAVALL 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNE7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispF PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35 Identity = 68/154 (44.16%), Postives = 102/154 (66.23%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 FR+G+G+D+HRL G PLI+GGI + H G + HSD DVL H ++DA+LGAL L DIG FP +DP+WKGA S + + +L+ + G+ IGNLD+ ++ ++PKL P+ +R L+++L +P + + A T+EK+ G I A+ V LL Sbjct: 4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTNEKLGPTGREEGICAYAVALL 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_GEOTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispF PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35 Identity = 71/154 (46.10%), Postives = 103/154 (66.88%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 FR+G GFD+H+ G PLIIGG+++P+E+G HSD DVLLH V DA LGA+G DIG+ FPD+DP++K A S+ + L+ + GY + N D T+I Q+PK++PY E ++ ++ LL A+ + VN+ A T EK+ G +AA V+LL Sbjct: 2 FRIGQGFDVHQFVEGRPLIIGGVHIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRYKDADSAELLAHVWSLVRQEGYVLVNADCTIIAQKPKMAPYIEEMKKVIARLLEAERSQVNVKATTTEKLGFTGREEGVAAQVVVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CYAP4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispF PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35 Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G+G+D+HRL PLI+GG+N+PHE G HSD DVL H ++DA+LGAL L DIG FP DP+W GA S + + +L+ E G+++GN+D+ ++ +RPKL P+ +R LS +L P + + A T+EK+ G I A+ V +L Sbjct: 5 RIGNGYDIHRLVSDRPLILGGVNIPHELGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPGDPQWAGADSLKLLAQVHQLVQERGWQVGNIDSVIVAERPKLKPHLAAMRDRLSAVLKVKPDQIGIKATTNEKLGPEGREEGICAYAVAVL 157 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |