CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PROM2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 70/156 (44.87%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGYPLIIGGI--NVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            FR+G+G+D+HRLE G  LIIGG+  N P   G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK   S + + + + L+ + G+EI N+D+ ++ +RPK+ PY E ++ NLS+ L  D + + + A T+EK+   G    I+ H+V+LL
Sbjct:    8 FRIGNGYDIHRLEIGRKLIIGGVKLNHPDNLGLDGHSDADVLSHSIMDALLGALSLGDIGKYFPPSDEKWKDVDSLILLSKVIDLVRKQGWEINNIDSVIVAERPKIKPYVEIMKRNLSKTLKIDDSFIGIKATTNEKLGPEGREEGISCHSVVLL 163          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_FUSNN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=ispF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 67/153 (43.79%), Postives = 106/153 (69.28%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+G+D+H+L  G  L++GG+ VPH +G   HSDGDVLLH + DAI+GALGL DIG  FPD+D   K   S++ +K+   +M E  Y+I NLD+ +++Q+PKL PY ++IR N++++L  +  ++N+ A T EK+   G+   + ++ V+LL
Sbjct:    3 RIGNGYDVHKLVEGRKLMLGGVEVPHTKGVLGHSDGDVLLHAITDAIIGALGLGDIGLHFPDNDENLKDIDSAILLKKINNIMKEKNYKIVNLDSIIVMQKPKLRPYIDSIRDNIAKILEINSELINVKAKTEEKLGFTGDETGVKSYCVVLL 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CLOD6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium difficile (strain 630) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 68/153 (44.44%), Postives = 106/153 (69.28%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G+D+H+L     LIIGG+ +PH++G   HSD DVL+H ++D+ILGAL L DIG+ FPD+D ++KGA S   ++    L+   GY+IGN+D+T+I Q PK++PY E++R+N+S++L  D   +N+ A T E +   G  + IA+ ++ LL
Sbjct:    2 RIGLGYDVHKLTEDRKLIIGGVEIPHDKGLLGHSDADVLIHAIMDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQSPKMAPYIESMRSNISKVLNTDIDNINIKATTEEGLGFTGAKQGIASQSICLL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_AZOVD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHG+D+HR   G  + +GG+ +PH  G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KG  S V ++  V L+ E G+ +GN+DAT++ Q PK++P+ E +R +++E L      VN+ A T EK+   G    IA H V LL
Sbjct:    2 RIGHGYDVHRFAEGDFVTLGGVRIPHRFGLLAHSDGDVLLHALCDALLGAAALGDIGRHFPDTDPRFKGVDSRVLLRHVVALVREKGWRVGNVDATIVAQAPKMAPHIERMRLSIAEDLQVGVEQVNVKATTTEKLGFTGREEGIAVHAVALL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ANAVT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 67/156 (42.95%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R+G+G+D+HRL     LI+GG+++PHE G   HSD DVL H ++DA+LGAL L DIG  FP +DP+W GA S V + +   L+   G+ IGN+D+ ++ +RPKL P+ +T+R  L+ +L  +P  + + A T+EK+  +G    I A+ V+LL
Sbjct:    3 MSIRIGNGYDIHRLVSDRALILGGVHIPHELGLLGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWAGADSLVLLNQVNELIRAQGWRIGNIDSVVVAERPKLKPHIKTMRDKLANVLQLEPNQIGVKATTNEKLGPVGREEGICAYAVVLL 158          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ALKMQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVI 685
            RVG G+D+HRL  G  LI+GG+ +PHE+G   HSD DVLLH + DA+LGA+ L DIG+ FPD+D K+KG  S   + E  R++ E  Y   N+DAT+I Q PK++PY E +R N++E+LG     VN+ A T E +  +G    IAA  ++
Sbjct:    2 RVGIGYDVHRLVEGRKLIVGGVEIPHEKGLLGHSDADVLLHAIKDALLGAVALGDIGKHFPDTDEKYKGESSLYLLNEVGRMLAEKAYVANNIDATIIAQEPKMAPYIELMRRNIAEVLGIKVEQVNIKATTTEGIGFVGRGEGIAAQAIV 152          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 68/154 (44.16%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P  + + A T+EK+   G    I A+ V LL
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTNEKLGPTGREEGICAYAVALL 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNE7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 68/154 (44.16%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P  + + A T+EK+   G    I A+ V LL
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTNEKLGPTGREEGICAYAVALL 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_GEOTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 71/154 (46.10%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            FR+G GFD+H+   G PLIIGG+++P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L+ + GY + N D T+I Q+PK++PY E ++  ++ LL A+ + VN+ A T EK+   G    +AA  V+LL
Sbjct:    2 FRIGQGFDVHQFVEGRPLIIGGVHIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRYKDADSAELLAHVWSLVRQEGYVLVNADCTIIAQKPKMAPYIEEMKKVIARLLEAERSQVNVKATTTEKLGFTGREEGVAAQVVVLL 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CYAP4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+G+D+HRL    PLI+GG+N+PHE G   HSD DVL H ++DA+LGAL L DIG  FP  DP+W GA S   + +  +L+ E G+++GN+D+ ++ +RPKL P+   +R  LS +L   P  + + A T+EK+   G    I A+ V +L
Sbjct:    5 RIGNGYDIHRLVSDRPLILGGVNIPHELGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPGDPQWAGADSLKLLAQVHQLVQERGWQVGNIDSVIVAERPKLKPHLAAMRDRLSAVLKVKPDQIGIKATTNEKLGPEGREEGICAYAVAVL 157          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PROM21.262e-3544.872-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FUSNN1.262e-3543.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CLOD61.262e-3544.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOVD1.262e-3546.412-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ANAVT1.262e-3542.952-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ALKMQ1.262e-3547.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNP61.648e-3544.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNE71.648e-3544.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOTN1.648e-3546.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CYAP41.648e-3543.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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