CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_DINSH (Bifunctional enzyme ispD/ispF OS=Dinoroseobacter shibae (strain DFL 12) GN=ispDF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 71/156 (45.51%), Postives = 98/156 (62.82%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R G+G+D+HR   G  +I+ G+ VPH+R    HSD DV +H V DAI GALG  DIGQ FP SDP+WKGA S +F++ AV L  E GY I ++D TL+ +RPK+ PY   ++  +SEL+G  P  V++ A T E++   G    IAA   + L
Sbjct:  242 MDIRTGNGYDVHRFGTGDAVILCGVEVPHDRALMGHSDADVGMHAVTDAIYGALGDGDIGQHFPPSDPQWKGAASEIFLRHAVALAAERGYTITHMDCTLVCERPKIGPYHAVMKAKMSELMGLQPDQVSVKATTSERLGFTGREEGIAALATVTL 397          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H+     P+IIGG+ VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R + E GY++GN D T+I Q PK++PY + +R  ++  L  D   +N+ A T E++   G    IA   V+LL
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETDIRNINVKATTTERLGFTGRKEGIATEAVVLL 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYMTH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Symbiobacterium thermophilum GN=ispF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 68/152 (44.74%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +G G+D+HRL PG PL++GG+ +P +RG E HSD DV LH ++DA+LGA GL DIG  FP +DP W GA S   ++  V L+ E GY   N D T++ +RPK+ PY   +R  +  +LG +P  V++ A T+E++  +G    IAA+ V L+
Sbjct:    3 IGFGYDVHRLVPGRPLVLGGVEIPSKRGLEGHSDADVALHALMDALLGAAGLGDIGTHFPPTDPAWAGANSLDLLRRVVGLLAEEGYRPVNCDITVVAERPKIGPYVPAMRERIGAVLGVEPRRVSIKATTNEQMGFVGREEGIAAYAVALI 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain BH72) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 73/155 (47.10%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  227 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            PFRVG GFD+H L PG  LI+GG+++P   G   HSD DVLLH + DA+LGA GL DIG++FPD+DP   GA S V ++EA   +  AG+E  N+DATLI + P++ P+   +  N++  LG D   +N+   T EK+   G    IAA  V LL
Sbjct:    4 PFRVGQGFDVHALVPGRALIVGGVDIPFSAGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDPAHAGADSRVLLREAYARVKAAGWEAVNVDATLICRAPRILPHAPAMVVNIAADLGMDAAAINIKGKTTEKLGFTGRGEGIAAQVVALL 158          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ACTSZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ispF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H L    PLIIGG+ VP+  G  AHSDGDV+LH + DA+LGA+ L DIG++FPD+D ++K   S + ++EA R + E GY +GN+D T+I Q PK+ PY + +R  ++E L      VN+ A T EK+   G +  IA   V+LL
Sbjct:    3 RIGHGFDVHALGEARPLIIGGVKVPYHTGFIAHSDGDVVLHALTDALLGAVALGDIGKLFPDTDMQFKDIDSRILLREAFRRVKEKGYAVGNVDVTIIAQAPKMRPYIDAMRAVIAEDLQCGIDQVNVKATTTEKLGFTGRSEGIATEAVVLL 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PROM9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35
Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGYPLIIGGINVPH--ERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            FR+G+G+D+HRL  G  LIIGG+N+ H    G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK   S + + + + L+ + G+EI N+D+ L+ +RPK+ P+ E ++ NLS  L  D + + + A T+EK+   G    I+ H+V+LL
Sbjct:    8 FRIGNGYDIHRLVTGRKLIIGGVNLKHPDNLGLDGHSDADVLTHSIMDALLGALSLGDIGKYFPPSDDKWKDVDSLILLSKVIDLVRKQGWEINNIDSVLVAERPKIKPFVEIMKKNLSNTLKIDNSFIGIKATTNEKLGPEGREEGISCHSVVLL 163          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_HAES2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus somnus (strain 2336) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35
Identity = 70/153 (45.75%), Postives = 105/153 (68.63%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+ L DIG++FPD+D ++KGA S   ++ A + + + GY++GN+D T+I Q PK+ PY +++RT +++ L  D   VN+ A T EK+   G +  IA   V+LL
Sbjct:    3 RIGHGFDVHAFGGEGPIIIGGVAIPYEKGLVAHSDGDVALHALTDALLGAMALGDIGKLFPDTDIQYKGADSRRLLRTAYQAILDKGYQVGNVDITIIAQAPKMRPYIDSMRTVIAQDLHCDIEQVNVKATTTEKLGFTGRSEGIACEAVVLL 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35
Identity = 76/158 (48.10%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  224 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S   ++EA R + EAGYEIGN+DAT+I Q PKL+P+   +  NL+E L       N+ A T+EK+   G    I A   +LL
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAEDLAIARGRCNVKAKTNEKLGFEGRQEGIVAQAAVLL 159          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_XYLFT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            L  R+G G+D+H   P   +++GG+ VPH  G  AHSDGDV+LH + DA+LGALGL DIGQ FP SD +WKGA S VF++    L+ E  + +GN+DAT I + PK++PY   +R  ++ LL   P  V++ A T E +  +G    +AA  V+LL
Sbjct:   13 LNVRIGQGYDVHAFGPSDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFPPSDVRWKGADSGVFVRHCNLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATTSEGLGFIGRGEGLAAQVVVLL 168          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNJB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 66/153 (43.14%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G+D+HRL  G PLI+GGI +P+E+G   HSD DVL H ++DA+LGA  L DIG  FP  D +WKGA S + +++ V+L+ + G+ I N+D+ ++ ++PKL P+   I+  L+E +   P  V + A T+EK+  +G+  ++AA  V+LL
Sbjct:    2 RIGQGYDIHRLVEGRPLILGGIRIPYEKGLLGHSDADVLTHAIMDALLGAAALRDIGYYFPPEDERWKGADSILLLQQVVQLVGQEGWRIANVDSVVVAEQPKLKPHIPAIQARLAEAMQLSPKQVGVKATTNEKLGPVGQGEAMAAFAVVLL 154          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_DINSH1.648e-3545.51Bifunctional enzyme ispD/ispF OS=Dinoroseobacter s... [more]
ISPF_VIBVY2.152e-3546.412-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYMTH2.152e-3544.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOSB2.152e-3547.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACTSZ2.152e-3547.062-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROM92.811e-3544.232-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAES22.811e-3545.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CUPTR2.811e-3548.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_XYLFT3.671e-3545.512-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNJB3.671e-3543.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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