CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_DINSH (Bifunctional enzyme ispD/ispF OS=Dinoroseobacter shibae (strain DFL 12) GN=ispDF PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35 Identity = 71/156 (45.51%), Postives = 98/156 (62.82%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R G+G+D+HR G +I+ G+ VPH+R HSD DV +H V DAI GALG DIGQ FP SDP+WKGA S +F++ AV L E GY I ++D TL+ +RPK+ PY ++ +SEL+G P V++ A T E++ G IAA + L Sbjct: 242 MDIRTGNGYDVHRFGTGDAVILCGVEVPHDRALMGHSDADVGMHAVTDAIYGALGDGDIGQHFPPSDPQWKGAASEIFLRHAVALAAERGYTITHMDCTLVCERPKIGPYHAVMKAKMSELMGLQPDQVSVKATTSERLGFTGREEGIAALATVTL 397
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35 Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H+ P+IIGG+ VP+E+G AHSDGDV LH + DA+LGA+ DIG+ FPD+D KWKGA S +K+ R + E GY++GN D T+I Q PK++PY + +R ++ L D +N+ A T E++ G IA V+LL Sbjct: 3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETDIRNINVKATTTERLGFTGRKEGIATEAVVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYMTH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Symbiobacterium thermophilum GN=ispF PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35 Identity = 68/152 (44.74%), Postives = 99/152 (65.13%), Query Frame = 2 Query: 236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 +G G+D+HRL PG PL++GG+ +P +RG E HSD DV LH ++DA+LGA GL DIG FP +DP W GA S ++ V L+ E GY N D T++ +RPK+ PY +R + +LG +P V++ A T+E++ +G IAA+ V L+ Sbjct: 3 IGFGYDVHRLVPGRPLVLGGVEIPSKRGLEGHSDADVALHALMDALLGAAGLGDIGTHFPPTDPAWAGANSLDLLRRVVGLLAEEGYRPVNCDITVVAERPKIGPYVPAMRERIGAVLGVEPRRVSIKATTNEQMGFVGREEGIAAYAVALI 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain BH72) GN=ispF PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35 Identity = 73/155 (47.10%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 227 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 PFRVG GFD+H L PG LI+GG+++P G HSD DVLLH + DA+LGA GL DIG++FPD+DP GA S V ++EA + AG+E N+DATLI + P++ P+ + N++ LG D +N+ T EK+ G IAA V LL Sbjct: 4 PFRVGQGFDVHALVPGRALIVGGVDIPFSAGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDPAHAGADSRVLLREAYARVKAAGWEAVNVDATLICRAPRILPHAPAMVVNIAADLGMDAAAINIKGKTTEKLGFTGRGEGIAAQVVALL 158
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ACTSZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ispF PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35 Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H L PLIIGG+ VP+ G AHSDGDV+LH + DA+LGA+ L DIG++FPD+D ++K S + ++EA R + E GY +GN+D T+I Q PK+ PY + +R ++E L VN+ A T EK+ G + IA V+LL Sbjct: 3 RIGHGFDVHALGEARPLIIGGVKVPYHTGFIAHSDGDVVLHALTDALLGAVALGDIGKLFPDTDMQFKDIDSRILLREAFRRVKEKGYAVGNVDVTIIAQAPKMRPYIDAMRAVIAEDLQCGIDQVNVKATTTEKLGFTGRSEGIATEAVVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PROM9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispF PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35 Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGYPLIIGGINVPH--ERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 FR+G+G+D+HRL G LIIGG+N+ H G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK S + + + + L+ + G+EI N+D+ L+ +RPK+ P+ E ++ NLS L D + + + A T+EK+ G I+ H+V+LL Sbjct: 8 FRIGNGYDIHRLVTGRKLIIGGVNLKHPDNLGLDGHSDADVLTHSIMDALLGALSLGDIGKYFPPSDDKWKDVDSLILLSKVIDLVRKQGWEINNIDSVLVAERPKIKPFVEIMKKNLSNTLKIDNSFIGIKATTNEKLGPEGREEGISCHSVVLL 163
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_HAES2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus somnus (strain 2336) GN=ispF PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35 Identity = 70/153 (45.75%), Postives = 105/153 (68.63%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA+ L DIG++FPD+D ++KGA S ++ A + + + GY++GN+D T+I Q PK+ PY +++RT +++ L D VN+ A T EK+ G + IA V+LL Sbjct: 3 RIGHGFDVHAFGGEGPIIIGGVAIPYEKGLVAHSDGDVALHALTDALLGAMALGDIGKLFPDTDIQYKGADSRRLLRTAYQAILDKGYQVGNVDITIIAQAPKMRPYIDSMRTVIAQDLHCDIEQVNVKATTTEKLGFTGRSEGIACEAVVLL 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35 Identity = 76/158 (48.10%), Postives = 101/158 (63.92%), Query Frame = 2 Query: 224 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 +PF RVG G+D+H L PG LI+GG+ +PH+RG HSD D LLH V DA+ GA L DIG+ FPD+D ++ GA S ++EA R + EAGYEIGN+DAT+I Q PKL+P+ + NL+E L N+ A T+EK+ G I A +LL Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAEDLAIARGRCNVKAKTNEKLGFEGRQEGIVAQAAVLL 159
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_XYLFT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 L R+G G+D+H P +++GG+ VPH G AHSDGDV+LH + DA+LGALGL DIGQ FP SD +WKGA S VF++ L+ E + +GN+DAT I + PK++PY +R ++ LL P V++ A T E + +G +AA V+LL Sbjct: 13 LNVRIGQGYDVHAFGPSDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFPPSDVRWKGADSGVFVRHCNLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATTSEGLGFIGRGEGLAAQVVVLL 168
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNJB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 66/153 (43.14%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G G+D+HRL G PLI+GGI +P+E+G HSD DVL H ++DA+LGA L DIG FP D +WKGA S + +++ V+L+ + G+ I N+D+ ++ ++PKL P+ I+ L+E + P V + A T+EK+ +G+ ++AA V+LL Sbjct: 2 RIGQGYDIHRLVEGRPLILGGIRIPYEKGLLGHSDADVLTHAIMDALLGAAALRDIGYYFPPEDERWKGADSILLLQQVVQLVGQEGWRIANVDSVVVAEQPKLKPHIPAIQARLAEAMQLSPKQVGVKATTNEKLGPVGQGEAMAAFAVVLL 154 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |