CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNJA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 66/153 (43.14%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G+D+HRL  G PLI+GGI +P+E+G   HSD DVL H ++DA+LGA  L DIG  FP  D +WKGA S + +++ V+L+ + G+ I N+D+ ++ ++PKL P+   I+  L+E +   P  V + A T+EK+  +G+  ++AA  V+LL
Sbjct:    2 RIGQGYDIHRLVEGRPLILGGIRIPYEKGLLGHSDADVLTHAIMDALLGAAALRDIGYYFPPEDERWKGADSILLLQQVVQLVGQEGWRIANVDSVVVAEQPKLKPHIPAIQARLAEAMQLSPKQVGVKATTNEKLGPVGQGEAMAAFAVVLL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHESR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain MR-7) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I Q PK++P+ E +R  L+  L AD   +N+ A T EK+   G    IA   V+LL
Sbjct:    1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADIADINVKATTTEKLGFTGRKEGIAVEAVVLL 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHESM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain MR-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I Q PK++P+ E +R  L+  L AD   +N+ A T EK+   G    IA   V+LL
Sbjct:    1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADIADINVKATTTEKLGFTGRKEGIAVEAVVLL 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHESA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain ANA-3) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I Q PK++P+ E +R  L+  L AD   +N+ A T EK+   G    IA   V+LL
Sbjct:    1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADIADINVKATTTEKLGFTGRKEGIAVEAVVLL 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHEON (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella oneidensis GN=ispF PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I Q PK++P+ E +R  L+  L AD   +N+ A T EK+   G    IA   V+LL
Sbjct:    1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALAKAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADVADINVKATTTEKLGFTGRKEGIAVEAVVLL 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain KT2440) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 70/153 (45.75%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++   G+++GN+DAT++ Q PK++P+ ET+R  ++E L  +   VN+ A T EK+   G    IA H+V LL
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRALLRHVVGIVKAKGWKVGNVDATIVAQAPKMAPHIETMRQLIAEDLQVELDQVNVKATTTEKLGFTGREEGIAVHSVALL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEP1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 70/153 (45.75%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++   G+++GN+DAT++ Q PK++P+ ET+R  ++E L  +   VN+ A T EK+   G    IA H+V LL
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRALLRHVVGIVKAKGWKVGNVDATIVAQAPKMAPHIETMRQLIAEDLQVELDQVNVKATTTEKLGFTGREEGIAVHSVALL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PHOLL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 73/153 (47.71%), Postives = 98/153 (64.05%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H+     P+IIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KG  S   ++EA   + E GY IGNLD T+I Q PK+ P+   +R NL+E L      +N+ A T EK+  +G    IA   V LL
Sbjct:    2 RIGHGFDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGVDSRKLLREAYSRIREKGYRIGNLDITIIAQAPKMLPHIPQMRVNLAEDLQCHIDDINVKATTTEKLGFVGRKEGIACEAVALL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BURPP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 71/156 (45.51%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            + FR+G G+D+H L PG PLIIGG+ +P+ERG   HSD DVLLH + DAI GA  + DIG+ F D+D K+ GA S V ++E    +  AG+ I N+D++++ Q PKL+P+ E +R N++  LG     VN+ A T+EK+  LG    I A   +LL
Sbjct:    1 MDFRIGQGYDVHALVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDAIFGAAAMGDIGRHFSDTDAKFAGADSRVLLRECFARVKAAGFSIANVDSSVVAQAPKLAPHIEGMRANIAADLGLPVERVNVKAKTNEKLGYLGRGEGIEAQAAVLL 156          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain EbN1) GN=ispF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 72/155 (46.45%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  227 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            PFR+G GFD+H L PG  LI+GG+++P ERG   HSD DVLLH + DA+LGA GL DIG++FPD+D    GA S V ++EA   +  AG+ + N+DAT+I + P++ P+   +  N++  LG D   VN+   T EK+   G    IAA  V LL
Sbjct:    4 PFRIGQGFDVHALVPGRALIVGGVHIPFERGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDAAHAGADSRVLLREAFAAVRAAGFGVVNVDATVICRAPRILPHAPAMVANIAADLGIDAAAVNIKGKTTEKLGFTGRGEGIAAQVVALL 158          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SYNJA3.671e-3543.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESR3.671e-3546.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESM3.671e-3546.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESA3.671e-3546.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEON3.671e-3546.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEPK3.671e-3545.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEP13.671e-3545.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PHOLL3.671e-3547.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURPP3.671e-3545.512-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOSE3.671e-3546.452-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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