CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SYNJA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 66/153 (43.14%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G G+D+HRL G PLI+GGI +P+E+G HSD DVL H ++DA+LGA L DIG FP D +WKGA S + +++ V+L+ + G+ I N+D+ ++ ++PKL P+ I+ L+E + P V + A T+EK+ +G+ ++AA V+LL Sbjct: 2 RIGQGYDIHRLVEGRPLILGGIRIPYEKGLLGHSDADVLTHAIMDALLGAAALRDIGYYFPPEDERWKGADSILLLQQVVQLVGQEGWRIANVDSVVVAEQPKLKPHIPAIQARLAEAMQLSPKQVGVKATTNEKLGPVGQGEAMAAFAVVLL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHESR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain MR-7) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA+ L DIG+ FPD+D +KGA S V ++ L G+E+GNLD T+I Q PK++P+ E +R L+ L AD +N+ A T EK+ G IA V+LL Sbjct: 1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADIADINVKATTTEKLGFTGRKEGIAVEAVVLL 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHESM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain MR-4) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA+ L DIG+ FPD+D +KGA S V ++ L G+E+GNLD T+I Q PK++P+ E +R L+ L AD +N+ A T EK+ G IA V+LL Sbjct: 1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADIADINVKATTTEKLGFTGRKEGIAVEAVVLL 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHESA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain ANA-3) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA+ L DIG+ FPD+D +KGA S V ++ L G+E+GNLD T+I Q PK++P+ E +R L+ L AD +N+ A T EK+ G IA V+LL Sbjct: 1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADIADINVKATTTEKLGFTGRKEGIAVEAVVLL 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_SHEON (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella oneidensis GN=ispF PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA+ L DIG+ FPD+D +KGA S V ++ L G+E+GNLD T+I Q PK++P+ E +R L+ L AD +N+ A T EK+ G IA V+LL Sbjct: 1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALAKAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADVADINVKATTTEKLGFTGRKEGIAVEAVVLL 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain KT2440) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 70/153 (45.75%), Postives = 104/153 (67.97%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ G+++GN+DAT++ Q PK++P+ ET+R ++E L + VN+ A T EK+ G IA H+V LL Sbjct: 2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRALLRHVVGIVKAKGWKVGNVDATIVAQAPKMAPHIETMRQLIAEDLQVELDQVNVKATTTEKLGFTGREEGIAVHSVALL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEP1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 70/153 (45.75%), Postives = 104/153 (67.97%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ G+++GN+DAT++ Q PK++P+ ET+R ++E L + VN+ A T EK+ G IA H+V LL Sbjct: 2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRALLRHVVGIVKAKGWKVGNVDATIVAQAPKMAPHIETMRQLIAEDLQVELDQVNVKATTTEKLGFTGREEGIAVHSVALL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PHOLL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 73/153 (47.71%), Postives = 98/153 (64.05%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H+ P+IIGG+ +P+E+G AHSDGDV LH DA+LGA L DIG++FPD+DP +KG S ++EA + E GY IGNLD T+I Q PK+ P+ +R NL+E L +N+ A T EK+ +G IA V LL Sbjct: 2 RIGHGFDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGVDSRKLLREAYSRIREKGYRIGNLDITIIAQAPKMLPHIPQMRVNLAEDLQCHIDDINVKATTTEKLGFVGRKEGIACEAVALL 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BURPP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 71/156 (45.51%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 224 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 + FR+G G+D+H L PG PLIIGG+ +P+ERG HSD DVLLH + DAI GA + DIG+ F D+D K+ GA S V ++E + AG+ I N+D++++ Q PKL+P+ E +R N++ LG VN+ A T+EK+ LG I A +LL Sbjct: 1 MDFRIGQGYDVHALVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDAIFGAAAMGDIGRHFSDTDAKFAGADSRVLLRECFARVKAAGFSIANVDSSVVAQAPKLAPHIEGMRANIAADLGLPVERVNVKAKTNEKLGYLGRGEGIEAQAAVLL 156
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain EbN1) GN=ispF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 72/155 (46.45%), Postives = 99/155 (63.87%), Query Frame = 2 Query: 227 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 PFR+G GFD+H L PG LI+GG+++P ERG HSD DVLLH + DA+LGA GL DIG++FPD+D GA S V ++EA + AG+ + N+DAT+I + P++ P+ + N++ LG D VN+ T EK+ G IAA V LL Sbjct: 4 PFRIGQGFDVHALVPGRALIVGGVHIPFERGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDAAHAGADSRVLLREAFAAVRAAGFGVVNVDATVICRAPRILPHAPAMVANIAADLGIDAAAVNIKGKTTEKLGFTGRGEGIAAQVVALL 158 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |