CX296782

Overview
NameCX296782
Unique NameCX296782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296782 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.460e-27
Identity = 68/167 (40.72%), Postives = 96/167 (57.49%), Query Frame = -3
Query:  270 AIHPGYKKIPVLVHNGKPLAESLLIIEYIDEAWK-----QNPLLPEDPYERANARFWAKFFDEKCVPEVMGA-FASKGEEQEKAAKARE--NLKMLERAL----EGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIP 734
            A +P +K +PVL+H G+P+ ES +I++YIDE W      +  ++P DPYERA ARFWA + D+K  P  +   F SK EE+  AA A+    L+ LE A     +GKPFFGGD +GF+D+ +G    W   ++++ G  LID    P L AW   F      K  +P
Sbjct:   48 ASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVP 214          
BLAST of CX296782 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27
Identity = 61/156 (39.10%), Postives = 89/156 (57.05%), Query Frame = -3
Query:  270 IHPGYKKIPVLVHNGKPLAESLLIIEYIDEAWK-QNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAKARENL-KMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIP 731
            ++P +KKIPVL+HNGKP+ ES +I++YIDE W  ++PL+P DPY+R+ ARFW  + D+K        + SKGEE E+  K   ++ K LE  L  KPF+G D  GF+D+ +     W    E      +   E  P L AW+   +E   +   +P
Sbjct:   47 MNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKM--EEECPKLMAWVKRCMERETVSNTLP 200          
BLAST of CX296782 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 64/181 (35.36%), Postives = 96/181 (53.04%), Query Frame = -3
Query:  240 AIHPGYKKIPVLV-HNGKPLAESLLIIEYIDEAWKQNP-------LLPEDPYERANARFWAKFFDEKCVP--EVMGAFASKGEEQEKAAKARENLKMLERALE----GKPFF-GGDKI-GFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNK 734
            A +P Y KIPVL+  +G+ + ES +I++YI++  +++        LLP+DPYERA  RFW  F D+K  P  + +    + G   + A   R  L +LE A +    G+ FF GGD   G LD+A+G      R  E + G+SLIDA   PLL  W   F   P  K  +P   ++++  +
Sbjct:   43 AANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFTR 223          
BLAST of CX296782 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.308e-17
Identity = 59/166 (35.54%), Postives = 87/166 (52.41%), Query Frame = -3
Query:  267 HPGYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNP-LLP-------EDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFF---GGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPS 728
            +P ++KIPVL+H G+P++ESL+I++Y+D+A+   P LLP       +  Y RA ARFWA + D K        +  KGE Q  A +   E L+ LE  L  + FF   GG ++GF+D+A+     W    E   G S+   E  P L AW      +  +   +PS
Sbjct:   50 NPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVVKHLPS 213          
BLAST of CX296782 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 57/166 (34.34%), Postives = 85/166 (51.20%), Query Frame = -3
Query:  267 HPGYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLL--------PEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFF---GGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPS 728
            +P ++KIPVL+H G+P++ESL+I++Y+D+A+   P L         +  Y RA ARFWA + D K        +  KGE Q  A +   E L+ LE  L  + FF   GG ++GF+D+A+     W    E   G S+   E  P L AW      +  +   +PS
Sbjct:   50 NPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVAKHLPS 213          
The following BLAST results are available for this feature:
BLAST of CX296782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTU6_ORYSJ2.460e-2740.72Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX3_SOYBN5.481e-2739.10Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTX2_MAIZE3.804e-2035.36Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
GSTU1_ORYSJ2.308e-1735.54Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI5.142e-1734.34Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC05802G06SK FerrChloL1 Citrus clementina cDNA clone C05802G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296782 ID=CX296782; Name=CX296782; organism=Citrus clementina; type=EST; length=748bp
AGATTCGGCCGAGGCCTCCTGCCGAATTCGGCACGAGGTAACAATAATGT
ACCATATATGATATATATATAGTCTAGAAGACATTCATACAAACCTATGA
AGGATCATGCCTTATTTATGATAATATTTAGTCTAAAAGCAGTATTTATA
AATCATATTAAGAAACCTTCATGCATGGGCAACCGCTGATGATGGTAGAG
ACTTCAAGTTGATGAACCTGTCAAGATCTTGCGGAAGCCTTTATTGTGCT
CAAGCAATTCGTGCCAAGATGGTATGCATGCTTTGATAACAGGAACTTCA
AGAAAATTGTTCAACCAAGCAGTAAGCAAAGGCATCGTCTCTGCATCAAT
CAGGCTGACACCTGCAATTTCCTCAACAATTCGACCCCAGATTCCAATCC
ACCCCACAGCAATGTCCAGAAAGCCTATCTTGTCACCACCAAAAAAGGGC
TTCCCCTCCAGAGCCCTTTCCAGCATCTTCAGATTCTCTCGAGCTTTTGC
AGCTTTCTCTTGTTCCTCCCCTTTTGAGGCAAATGCTCCCATGACTTCAG
GTACACACTTCTCATCAAAGAATTTTGCCCAGAAACGTGCATTGGCCCGT
TCGTAAGGATCTTCTGGGAGGAGAGGATTTTGTTTCCACGCTTCATCAAT
GTATTCGATGATCAGTAGTGATTCTGCCAATGGTTTCCCATTGTGTACAA
GAACTGGAATCTTCTTATAACCCGGATGTATCGCACAGCAAGGGACTC
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