CX296786

Overview
NameCX296786
Unique NameCX296786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_RICBR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.021e-59
Identity = 115/165 (69.70%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            A+ V+K T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG  HL LP++N+V EAKA+T ANASVIYVPPPF            +++VVCITEGIP  DMVRVK AL   S+TRLIGPNCPGII P ECKIGIMPG+IH+ G +GIVSRSGTLTYEAV QT
Sbjct:    2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAKAKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRAL-VGSRTRLIGPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_RICTY (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi GN=sucD PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.616e-59
Identity = 114/165 (69.09%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QT
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRAL-IGSKTRLIGPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.640e-59
Identity = 114/165 (69.09%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QT
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.640e-59
Identity = 109/165 (66.06%), Postives = 128/165 (77.58%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            ++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG  HLGLP+FNSV EA  ET A+A++I+VP PF            + LVVCITEGIP  DM+ VKA L +    R+IGPNCPG+I PGECKIGIMPG+IH+ G+VGIVSRSGTLTYEAV QT
Sbjct:    2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQSHLGLPIFNSVHEAVEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPGHIHQRGKVGIVSRSGTLTYEAVNQT 166          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.474e-58
Identity = 113/165 (68.48%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DM++VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QT
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRAL-IGSKTRLIGPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.925e-58
Identity = 114/165 (69.09%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QT
Sbjct:    2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.288e-58
Identity = 110/165 (66.67%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.288e-58
Identity = 110/165 (66.67%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.288e-58
Identity = 110/165 (66.67%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC16E8.17c PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.056e-56
Identity = 110/200 (55.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query:  115 RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            +  T    S  R SSS+      +N  S    + P + ++ +T+VI QG TGK GTFH + A++YGTK+VGG  PKK GT HLG PVF ++ EA  ETKA+AS ++VPPP             + L+V ITEGIPQHDM+RV   L  QSK+RL+GPNCPGII+PG+CKIGIMP +IHKPG +GIVSRSGTLTYEAV QT
Sbjct:    3 KTQTTLLTSLRRFSSSS----QLKNSKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQT 198          
The following BLAST results are available for this feature:
BLAST of CX296786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_RICBR1.021e-5969.70Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICTY6.616e-5969.09Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICFE8.640e-5969.09Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_COXBU8.640e-5966.06Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICPR1.474e-5868.48Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICCN1.925e-5869.09Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOLI4.288e-5866.67Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL64.288e-5866.67Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO574.288e-5866.67Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_SCHPO1.056e-5655.00Probable succinyl-CoA ligase [GDP-forming] subunit... [more]

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Properties
Property NameValue
Genbank descriptionC05802G10SK FerrChloL1 Citrus clementina cDNA clone C05802G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296786 ID=CX296786; Name=CX296786; organism=Citrus clementina; type=EST; length=718bp
TGCCGAATTCGGCACGAGGCGGCACGAGGGAAAATCAGCGAATCAGATTA
AAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCT
CGATCGGATCTCGCAGACCGTCTACTGCTTCTTCCGTTTCACATTACAGA
TTATCATCGTCGGCGGCGCCGGCGGCCCACTCTCGAAATTATGGGTCGTC
GGCGGCGGCGTCTCATCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTA
TATGCCAAGGCATCACCGGAAAAAACGGCACGTTCCACACCGAACAAGCC
ATCGAATACGGCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGG
GACTGAGCACTTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGG
CTGAAACGAAGGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCT
GCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTG
TATCACCGAAGGAATCCCTCAACATGATATGGTGCGAGTGAAAGCTGCTC
TAAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATC
ATCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAA
ACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAG
CAGTTTTTCAAACACTGT
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