CX296786

Overview
NameCX296786
Unique NameCX296786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.802e-56
Identity = 110/189 (58.20%), Postives = 134/189 (70.90%), Query Frame = 1
Query:  148 RLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            +L    +  A+S N  S  AA+   + ++ +T+V+ QG TGK GTFH +QAIEYGT +VGG  PKK G  HL  PVF++V+EA  ET A A+ I+VPPP             + L VCITEGIPQHDMVR+ + L  QSKTRL+GPNCPGII PG+CKIGIMPG+IHK GR+GIVSRSGTLTYEAV QT
Sbjct:   13 KLVQQLSKRAYSSN-SSPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVGGTNPKKAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQHDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPGFIHKRGRIGIVSRSGTLTYEAVNQT 200          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.073e-56
Identity = 109/165 (66.06%), Postives = 124/165 (75.15%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            +V ++K+T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA   T A ASVIYVP PF            + L+VCITEGIP  DM+  K   + +   RLIGPNCPG+I PGECKIGIMPG+IH PG+VGIVSRSGTLTYEAV QT
Sbjct:    2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAVEATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCD-ELGVRLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_BACSU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus subtilis GN=sucD PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 4.438e-55
Identity = 109/164 (66.46%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF++K+TRVI QGITG    FHT+Q +EYGT +VGGVTP KGGTE  G+PVFN+VAEA   T ANASVIYVP PF            LDLV+CITE IP  DMV+VK  +  + KTRLIGPNCPG+I P ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGK-KTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.438e-55
Identity = 105/162 (64.81%), Postives = 125/162 (77.16%), Query Frame = 1
Query:  229 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            ++K+T+VI QG TGK GTFH +Q +EY TK+VGGV   K GTEHLGLPVF +V+EA+ +T A+ASVIYVP               + LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GPNCPGII   +CKIGIMPG+IHK G +GIVSRSGTLTYEAV QT
Sbjct:   30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQT 191          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus influenzae GN=sucD PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.757e-54
Identity = 103/165 (62.42%), Postives = 123/165 (74.55%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            A+ +DKNT+VICQG TG  GTFH+EQA+ YGT++VGGV+P KGGT HLGLPVFN+V EA   T   A+VIYVP  F            + L+VCITEGIP  DM++VK  LN ++   +IGPNCPG+I P ECKIGIMP +IHK G+VGIVSRSGTLTYEAV QT
Sbjct:    2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGGTTHLGLPVFNTVREAVENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN-ETGVVMIGPNCPGVITPDECKIGIMPAHIHKKGKVGIVSRSGTLTYEAVKQT 165          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAAW (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MW2) GN=sucD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 103/164 (62.80%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAAS (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=sucD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 103/164 (62.80%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAAR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=sucD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 103/164 (62.80%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAAN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain N315) GN=sucD PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 103/164 (62.80%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAAM (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 103/164 (62.80%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
The following BLAST results are available for this feature:
BLAST of CX296786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_NEUCR1.802e-5658.20Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_PSEAE3.073e-5666.06Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_BACSU4.438e-5566.46Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_CAEEL4.438e-5564.81Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_HAEIN3.757e-5462.42Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAW3.516e-5262.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAS3.516e-5262.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAR3.516e-5262.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAN3.516e-5262.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAM3.516e-5262.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC05802G10SK FerrChloL1 Citrus clementina cDNA clone C05802G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296786 ID=CX296786; Name=CX296786; organism=Citrus clementina; type=EST; length=718bp
TGCCGAATTCGGCACGAGGCGGCACGAGGGAAAATCAGCGAATCAGATTA
AAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCT
CGATCGGATCTCGCAGACCGTCTACTGCTTCTTCCGTTTCACATTACAGA
TTATCATCGTCGGCGGCGCCGGCGGCCCACTCTCGAAATTATGGGTCGTC
GGCGGCGGCGTCTCATCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTA
TATGCCAAGGCATCACCGGAAAAAACGGCACGTTCCACACCGAACAAGCC
ATCGAATACGGCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGG
GACTGAGCACTTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGG
CTGAAACGAAGGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCT
GCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTG
TATCACCGAAGGAATCCCTCAACATGATATGGTGCGAGTGAAAGCTGCTC
TAAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATC
ATCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAA
ACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAG
CAGTTTTTCAAACACTGT
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