CX296786

Overview
NameCX296786
Unique NameCX296786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA1_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.364e-40
Identity = 85/167 (50.90%), Postives = 113/167 (67.66%), Query Frame = 1
Query:  217 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            P +F+DK+T+V+ QGI G  G FH+    +YGTK+VG V PKK GT   GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I   G++GIVSRSGTLTYEA + T
Sbjct:   13 PLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGTIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYAT 177          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.087e-40
Identity = 85/167 (50.90%), Postives = 113/167 (67.66%), Query Frame = 1
Query:  217 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            P +F+DK+TRV+ QGI G  G +H+    EYGTK+VG V PKK G    GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I + G++GIVSRSGTLTYEA + T
Sbjct:   13 PLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYAT 177          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA3_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.878e-40
Identity = 84/167 (50.30%), Postives = 113/167 (67.66%), Query Frame = 1
Query:  217 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            P +F+DK+T+V+ QGI G  G FH+    +YGTK+VG V PKK G+   GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I   G++GIVSRSGTLTYEA + T
Sbjct:   13 PLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYAT 177          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_METJA (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanocaldococcus jannaschii GN=sucD PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 81/163 (49.69%), Postives = 105/163 (64.42%), Query Frame = 1
Query:  223 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            + +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG    G+PVF++V EA  ET ANASVI+VP PF            ++L+V ITE IP HD +            ++IGPN PGI  P   K+GI+P  + K G VG+VSRSGTLTYE   Q
Sbjct:    8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQ 169          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium tuberculosis GN=sucD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 79/177 (44.63%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  211 SHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAA-LNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +H ++F+ ++ +VI QGITG   T HT + +  GT++VGGV  +K GT           + LPVF SVAEA  +T A+ S+I+VPP F            + L+V ITEGIP  D     A  L    KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+
Sbjct:    2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE 178          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_MYCBO (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium bovis GN=sucD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 79/177 (44.63%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  211 SHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAA-LNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +H ++F+ ++ +VI QGITG   T HT + +  GT++VGGV  +K GT           + LPVF SVAEA  +T A+ S+I+VPP F            + L+V ITEGIP  D     A  L    KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+
Sbjct:    2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE 178          
The following BLAST results are available for this feature:
BLAST of CX296786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA1_TRIVA2.364e-4050.90Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA2_TRIVA3.087e-4050.90Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA3_TRIVA6.878e-4050.30Succinyl-CoA ligase [GDP-forming] subunit alpha-3,... [more]
SUCD_METJA5.450e-3749.69Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCTU1.136e-3444.63Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCBO1.136e-3444.63Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC05802G10SK FerrChloL1 Citrus clementina cDNA clone C05802G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296786 ID=CX296786; Name=CX296786; organism=Citrus clementina; type=EST; length=718bp
TGCCGAATTCGGCACGAGGCGGCACGAGGGAAAATCAGCGAATCAGATTA
AAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCT
CGATCGGATCTCGCAGACCGTCTACTGCTTCTTCCGTTTCACATTACAGA
TTATCATCGTCGGCGGCGCCGGCGGCCCACTCTCGAAATTATGGGTCGTC
GGCGGCGGCGTCTCATCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTA
TATGCCAAGGCATCACCGGAAAAAACGGCACGTTCCACACCGAACAAGCC
ATCGAATACGGCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGG
GACTGAGCACTTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGG
CTGAAACGAAGGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCT
GCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTG
TATCACCGAAGGAATCCCTCAACATGATATGGTGCGAGTGAAAGCTGCTC
TAAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATC
ATCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAA
ACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAG
CAGTTTTTCAAACACTGT
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