CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BORPA (3-isopropylmalate dehydrogenase OS=Bordetella parapertussis GN=leuB PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 68/164 (41.46%), Postives = 102/164 (62.20%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN+++ T   +  +  EV+  YP++    + +DN  M LV+NP  FDV+V  NL+GDI+SD  A L G +G+ PS ++   G  L E  HGSAPDIAG+ +ANP A +LS+  +LR+ L L  +ADR++ A+   +A+G  RTAD+  + TT   T  + D
Sbjct:  190 VDKANVLE-TSQFWRDLVIEVSRDYPDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVEAAVRKVLADG-LRTADIHEAGTTKVSTSQMGD 351          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU32_BORBR (3-isopropylmalate dehydrogenase 2 OS=Bordetella bronchiseptica GN=leuB2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 68/164 (41.46%), Postives = 102/164 (62.20%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN+++ T   +  +  EV+  YP++    + +DN  M LV+NP  FDV+V  NL+GDI+SD  A L G +G+ PS ++   G  L E  HGSAPDIAG+ +ANP A +LS+  +LR+ L L  +ADR++ A+   +A+G  RTAD+  + TT   T  + D
Sbjct:  190 VDKANVLE-TSQFWRDLVIEVSRDYPDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVEAAVRKVLADG-LRTADIHEAGTTKVSTSQMGD 351          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_THEAQ (3-isopropylmalate dehydrogenase OS=Thermus aquaticus GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN+++  +  +     EV + YP++  +   +D   M LVKNPA FDV+V  N++GDI+SDL + L G LGL PS ++G  G  + E VHGSAPDIAGK +ANPTA +LS+  ML H   L + A R++ A+   + E      DLGGS+ T  FT+ +  HL
Sbjct:  183 VDKANVLEVGE-FWRKTVEEVHKGYPDVALDHQYVDAMAMHLVKNPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARRVEAAVAKALRETP--PPDLGGSAGTQAFTEEVLRHL 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAS1 (3-isopropylmalate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 68/166 (40.96%), Postives = 103/166 (62.05%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDK-ADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+ +V  EV++ YP++    +++D C M L+ NP+ FDV+V  NL+GDI+SD  + + G LGL+PS +  E G  L E +HGSAPDIA +++ANP  +LLS    LR     DK AD+++N I   I EGK  T DL G+  TS+    + ++L
Sbjct:  183 VDKENVLSSSK-LWRNVINEVSQSYPDVEVNHLLVDACAMHLITNPSQFDVIVTENLFGDILSDEASVIPGSLGLSPSASFSEQGPRLYEPIHGSAPDIANQDIANPFGMLLSVAMCLRESLNEDKAADKLENVIYQLIKEGK-TTRDLNGNYLTSEIFNYVKENL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUE (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon erigeronensis GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 61/153 (39.87%), Postives = 101/153 (66.01%), Query Frame = -2
Query:  273 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 728
            + K+N++ K+  L+  +  ++++ YP++    + IDN  M ++K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS   ++RH + L   AD+I  +++S + +G YRTAD+  +S
Sbjct:  193 LDKSNVL-KSSILWKEIVEKISKNYPDVHLSHLYIDNAIMQIIKDPSQFDVILCSNLFGDIVSDECAAITGSIGMLPSASLNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSVSMLVRHGMNLKKIADKIDESVVSVLKQG-YRTADISNNS 343          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BLOFL (3-isopropylmalate dehydrogenase OS=Blochmannia floridanus GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 66/149 (44.30%), Postives = 96/149 (64.43%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            I KAN++  T  L+  V  EVA  YP +  + + +DN  M L++NP+AFDV++ PNL+GDI+SD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  + R+ L+L+  A  I+ A+   +  G YRT D+
Sbjct:  194 IDKANVLH-TSMLWRKVVSEVASNYPNVHLQHLYVDNASMQLIRNPSAFDVILCPNLFGDILSDECAEINGSIGILPSASLNEHNFGLYEPAGGSAPDIAGKNIANPIAQILSTALLFRYSLKLNHVAITIEKAVYKALTLG-YRTQDI 340          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_THET2 (3-isopropylmalate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28
Identity = 71/166 (42.77%), Postives = 101/166 (60.84%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN+++  +  +     EV   YP++  E   +D   M LV++PA FDV+V  N++GDI+SDL + L G LGL PS ++G  G  + E VHGSAPDIAGK LANPTA +LS+  ML H   L + A ++++A+   + E      DLGGS+ T  FT  +  HL
Sbjct:  183 VDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGLANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLEAP--PPDLGGSAGTEAFTATVLRHL 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_NITMU (3-isopropylmalate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28
Identity = 64/149 (42.95%), Postives = 98/149 (65.77%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + K N+++ T  L+  V  E A +YP++    +++DN  M LV+NP  FDV+V  N++GDI+SD  + L G +G+ PS ++ E    L E +HGSAPDIAGK++ANP A +LS   MLR+  +  ++A RI+ A+   +A+G YRTAD+
Sbjct:  186 VDKMNVLESTQ-LWRDVVTETAGEYPDVELSHMLVDNAAMQLVRNPRQFDVVVTGNMFGDILSDEASMLTGSIGMLPSASLDERNKGLYEPIHGSAPDIAGKDVANPLATVLSVAMMLRYTFDREEEASRIERAVKKVLADG-YRTADI 332          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BUCDN (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Diuraphis noxia GN=leuB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28
Identity = 67/169 (39.64%), Postives = 106/169 (62.72%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST---TSDFTKAICDHL 728
            I KAN+++ +  L+  V  EV+++YP++    + IDN CM ++K+P  FDVL+  NL+GDIISD CA + G +G+ PS ++ E    L E   GSAPDI GKN+ANP A +LS   ++R+ + L+  A++I NA+++ + +G Y+T D+        T++    I D L
Sbjct:  193 IDKANVLESSI-LWREVVEEVSKEYPDVILSHLYIDNVCMQIIKDPNQFDVLLCSNLFGDIISDECAMITGSIGMLPSASLNEKNFGLYEPAGGSAPDIQGKNIANPIAQILSLSMLIRYSMNLNKIANKIDNAVINVLKKG-YKTMDISKDQNYLKTNEMGDVIADFL 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_THETN (3-isopropylmalate dehydrogenase OS=Thermoanaerobacter tengcongensis GN=leuB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 64/150 (42.67%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLG 728
            + KAN+++ +  L+     EVA++YPE+    + +DNC M LVKNP  FDV++  N++GDI+SD  A ++G +G+ PS ++    + L E +HGSAPDIAGK +ANP A +LS   ML++     + A  I+ A+   + EG +RTADLG
Sbjct:  188 VDKANVLESSR-LWRKTVEEVAKRYPEVELNHMYVDNCAMQLVKNPFQFDVILTNNMFGDILSDEAAQIVGSIGILPSASLRGDRVGLYEPIHGSAPDIAGKKIANPLATILSVAMMLQYSFGEEEAAQDIRKAVERALEEG-FRTADLG 335          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_BORPA1.627e-2841.463-isopropylmalate dehydrogenase OS=Bordetella para... [more]
LEU32_BORBR1.627e-2841.463-isopropylmalate dehydrogenase 2 OS=Bordetella br... [more]
LEU3_THEAQ2.126e-2843.373-isopropylmalate dehydrogenase OS=Thermus aquatic... [more]
LEU3_STAS12.126e-2840.963-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_BUCUE2.126e-2839.873-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_BLOFL2.126e-2844.303-isopropylmalate dehydrogenase OS=Blochmannia flo... [more]
LEU3_THET22.776e-2842.773-isopropylmalate dehydrogenase OS=Thermus thermop... [more]
LEU3_NITMU2.776e-2842.953-isopropylmalate dehydrogenase OS=Nitrosospira mu... [more]
LEU3_BUCDN2.776e-2839.643-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_THETN3.626e-2842.673-isopropylmalate dehydrogenase OS=Thermoanaerobac... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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