CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CORA7 (3-isopropylmalate dehydrogenase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 63/154 (40.91%), Postives = 99/154 (64.29%), Query Frame = -2
Query:  282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA---EGKYRTADLG 728
            +HK N++    GL+     EVA+++PE+T +   ID   + +V +PA +DV+V  NL+GDI++DL   + GG+GL  S NI   G   ++ E VHGSAPDIAGK +A+PTA +LS+  +LRHL   + A RI+ A+ + ++   + + RT ++G
Sbjct:  177 VHKTNVLVNAGGLWQRTVNEVAQEFPEVTVDYNHIDAATIYMVTDPARYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDASGANPSMFEPVHGSAPDIAGKGIADPTAAILSAAMLLRHLGDEENAVRIEEAVAADVSARGDAQARTTEIG 330          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_THIFE (3-isopropylmalate dehydrogenase OS=Thiobacillus ferrooxidans GN=leuB PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN+++ T  L+  V  EVA  YP++    + +DN  M L++ PA FDVL+  N++GDI+SD  + L G +G+ PS ++GEG  A+ E +HGSAPDIAG++ ANP A +LS   MLRH L     A R++ A+   + +G  RTAD+    T    TKA+
Sbjct:  188 VDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGR-AMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRTADIAAPGTPVIGTKAM 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RALEJ (3-isopropylmalate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=leuB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 64/149 (42.95%), Postives = 98/149 (65.77%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN+++ T   +  +  +V+++YP++    + +DN  M LVK P +FDV+V  N++GDI+SD  A L G +G+ PS ++      L E  HGSAPDIAGK +ANP A +LS+  MLR+ L   ++ADRI+NA+   +A+G YRT D+
Sbjct:  188 VDKANVLE-TFQFWKDIVIDVSKEYPDVELSHMYVDNAAMQLVKAPKSFDVIVTGNMFGDILSDEAAMLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRYSLNKAEQADRIENAVKKVLAQG-YRTGDI 334          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CHRVO (3-isopropylmalate dehydrogenase OS=Chromobacterium violaceum GN=leuB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 63/149 (42.28%), Postives = 98/149 (65.77%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN+++ T+  +  +  EVA++YP++    + +DN  M LV+NP  FDV+V  N++GDI+SD  + L G +G+ PS ++ +    L E  HGSAPDIAG+NLANP A +LS+  MLR+       A R+++A+   +A+G YRTAD+
Sbjct:  187 VDKANVLETTE-FWKEIMIEVAKEYPQVELSHMYVDNAAMQLVRNPKQFDVMVTGNIFGDILSDEASMLTGSIGMLPSASLDQNNKGLYEPSHGSAPDIAGQNLANPLATILSAAMMLRYSFGQEAAARRVEDAVKKVLAQG-YRTADI 333          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACSU (3-isopropylmalate dehydrogenase OS=Bacillus subtilis GN=leuB PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 67/166 (40.36%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN+++ +  L+  V  +VA+++P++  E +++DN  M L+  P  FDV+V  N++GDI+SD  + L G LG+ PS ++   G+ L E VHGSAPDIAGK +ANP A +LS+  +LR    L ++A  +++A+   +A GK RT DL  S   S  T+AI + +
Sbjct:  190 VDKANVLESSR-LWREVAEDVAQEFPDVKLEHMLVDNAAMQLIYAPNQFDVVVTENMFGDILSDEASMLTGSLGMLPSASLSSSGLHLFEPVHGSAPDIAGKGMANPFAAILSAAMLLRTSFGLEEEAKAVEDAVNKVLASGK-RTRDLARSEEFSS-TQAITEEV 352          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_WOLSU (3-isopropylmalate dehydrogenase OS=Wolinella succinogenes GN=leuB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.799e-27
Identity = 68/149 (45.64%), Postives = 96/149 (64.43%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  +  L+      +A++YPE+    + IDN  M L++NP  FDV++  NL+GDI+SD  + L G +GL PS +IG G  AL E +HGSAPDIAG+ +ANP A + S+  MLRH L   + AD I  AI+ T+ EG YRT D+
Sbjct:  186 VDKANVLDVSQ-LWRETVTRIAKEYPEVELSHMYIDNAAMQLIRNPKQFDVILTGNLFGDILSDEASMLSGSIGLLPSASIG-GKAALYEPIHGSAPDIAGQGIANPIATIASASMMLRHSLGEVEAADAIDKAIVKTLKEG-YRTKDI 331          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_THIDA (3-isopropylmalate dehydrogenase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=leuB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.799e-27
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = -2
Query:  270 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELH-DKADRIQNAILSTIAEGKYRTADLGGSST 728
            + KAN+++ ++ L+  +  EVA+ YPE+    + +DN  M L++ P  FD +V  N++GDI+SD  + L G +G+ PS ++ E    + E +HGSAPDIAGKNLANP A +LS   M R+       ADRI+NA+   IA+G YRT D+    T
Sbjct:  186 VEKANVLECSE-LWKEIMIEVAKDYPEVELSHMYVDNAAMQLIRAPKQFDTIVTGNIFGDILSDAASMLSGSIGMLPSASLDEHNKGMYEPIHGSAPDIAGKNLANPLATILSVAMMYRYTFADLATADRIENAVKQVIAKG-YRTGDIWTEGT 337          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJB (3-isopropylmalate dehydrogenase OS=Synechococcus sp. GN=leuB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.799e-27
Identity = 68/155 (43.87%), Postives = 97/155 (62.58%), Query Frame = -2
Query:  267 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 728
            + KAN+++ +  L+      +A +YPE+    + IDN  M LV+ P  FDV++  NL+GDI+SD  A L G +G+ PS ++G  G  L E VHGSAPDIAG++ ANP A +LS   MLR+ L+    ADRI+ A+ + +A+G YRT DL     T
Sbjct:  198 VDKANVLEVSQ-LWRERVNAIAAEYPEVELSHLYIDNAAMQLVRWPKQFDVILTGNLFGDILSDEAAMLTGSIGMLPSASLGSSGPGLYEPVHGSAPDIAGQDKANPIAQVLSGALMLRYSLDQPQAADRIEQAVEAVLAQG-YRTPDLYSEGMT 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_PELCD (3-isopropylmalate dehydrogenase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=leuB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.799e-27
Identity = 66/149 (44.30%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            I KAN++  T  L+  V   V+  YP++    + +DN  M LVK P  FDVL+ PN++GDI+SD  A L G LG+ PS ++ EG   + E   GSAPDIAGKN+ANP A +LS+  +LR+   L D AD ++ A+ + +A G  RT D+
Sbjct:  193 IDKANVLS-TSVLWREVVERVSADYPDVVLSHMYVDNAAMQLVKAPKQFDVLLCPNMFGDILSDEAAMLTGSLGMLPSASLAEGSFGMYEPAGGSAPDIAGKNIANPVAQILSAAMLLRYSCGLADAADAVEKAVENCLAAG-LRTGDI 339          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_NITOC (3-isopropylmalate dehydrogenase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=leuB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.799e-27
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN+++ T+ L+  V  EVA ++PE+    + +DN  M LV+ P  FDV+V  N++GDI+SD  A L G +G+ PS ++ + G  + E +HGSAPDIAG+ +ANP A +LS   MLR+ L+   +A R++ A+ + + +G  RT D+    TT   T A+ D
Sbjct:  190 VDKANVLEATE-LWREVMSEVAAEFPEVELSHMYVDNAAMQLVRAPKQFDVVVTTNMFGDILSDCAAMLTGSIGMLPSASLDQSGRGMYEPIHGSAPDIAGQGIANPLATILSVAMMLRYSLDSPAQATRLEKAVGAVLDQG-LRTPDIYSPGTTQVSTGAMGD 351          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_CORA78.077e-2840.913-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_THIFE1.055e-2742.593-isopropylmalate dehydrogenase OS=Thiobacillus fe... [more]
LEU3_RALEJ1.055e-2742.953-isopropylmalate dehydrogenase OS=Ralstonia eutro... [more]
LEU3_CHRVO1.055e-2742.283-isopropylmalate dehydrogenase OS=Chromobacterium... [more]
LEU3_BACSU1.055e-2740.363-isopropylmalate dehydrogenase OS=Bacillus subtil... [more]
LEU3_WOLSU1.799e-2745.643-isopropylmalate dehydrogenase OS=Wolinella succi... [more]
LEU3_THIDA1.799e-2742.213-isopropylmalate dehydrogenase OS=Thiobacillus de... [more]
LEU3_SYNJB1.799e-2743.873-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_PELCD1.799e-2744.303-isopropylmalate dehydrogenase OS=Pelobacter carb... [more]
LEU3_NITOC1.799e-2740.243-isopropylmalate dehydrogenase OS=Nitrosococcus o... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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