CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAAC (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain COL) GN=icd PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.057e-19
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  312 SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 683
            +  +E AEK  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  266 NAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHIME (3-isopropylmalate dehydrogenase OS=Rhizobium meliloti GN=leuB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAE-KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + K N+M K+  L+  V  E  + KY ++  E ++ D   M LV+ P  FDV+V  NL+GD++SD+ A L G LG+ PS ++G          AL E VHGSAPDIAG  +ANP A++ S    LR+   L  +AD ++ AI + + +G  RT D+
Sbjct:  191 MEKRNVM-KSGVLWNQVVTETHKAKYSDVQLEHMLADAGGMQLVRQPKQFDVIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKALYEPVHGSAPDIAGTGVANPIAMIASFAMCLRYSFNLVKEADDLEKAIANVLDQG-IRTGDI 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STRSL (Isocitrate dehydrogenase [NADP] OS=Streptococcus salivarius GN=icd PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.804e-19
Identity = 64/172 (37.21%), Postives = 95/172 (55.23%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVA-EKYPE------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLG---GSSTTSDFTKAI 728
            +HK NI + T+G F     EVA E Y E      +   +++ DN    ++ NP  FDV+ + NL GD  SD  A  +GG+G++P  NI  + G A+ EA HG+APDIA ++ ANP ++LLS   +L ++   + A  I +AI  T     + TADL     + +TS F+  I
Sbjct:  217 VHKGNIQKFTEGGFRKWGYEVAQEDYKEELLAGRLEINDIIADNFLQQILLNPEKFDVVALTNLNGDYASDALAAQVGGIGISPGANINYQTGHAIFEATHGTAPDIADQDKANPCSVLLSGCMLLDYIGWTEAAQLITSAIEKTFKADIF-TADLAFGKQAYSTSAFSNQI 387          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CANRU (3-isopropylmalate dehydrogenase OS=Candida rugosa GN=LEU2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19
Identity = 65/169 (38.46%), Postives = 97/169 (57.40%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDI-AGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V R + E++P + ++  +ID+  M+LV+ P   + V++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+ AGK   NP A +LS+  MLR  L+    ADRI+ A+   I  G   TADLGGSS+T +   AI
Sbjct:  188 LDKANVLASSRLWRKTVTRVMTEEFPTVPFQHQLIDSAAMILVQKPTKLNGVVLTSNMFGDIISDEASVIPGSLGLLPSASLASLPDTNTAFGLYEPCHGSAPDLPAGK--VNPLACILSAAMMLRLSLDNAAAADRIEQAVREVIDSG-VATADLGGSSSTGEVGDAI 353          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACTN (3-isopropylmalate dehydrogenase OS=Bacteroides thetaiotaomicron GN=leuB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 53/169 (31.36%), Postives = 96/169 (56.80%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL----GGSSTTSDFTKAICDHL 728
            + KAN++  +  L+  + +E+A  YPE+T + + +DN  M +++ PA FDV+V  N +GDI++D  + + G +GL PS + GE    + E +HGS P   G N+ANP A +LS   +  + +  ++   I+ A+ +++ E   RT ++    G    T +  + I D++
Sbjct:  185 VDKANVLASSR-LWRQIAQEMAPNYPEVTTDYMFVDNAAMKMIQEPAFFDVMVTENTFGDILTDEGSVISGSMGLLPSASTGE-STPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDCKEEGALIRKAVDASLDE-NVRTPEIQVADGAKYGTKEVGQWIVDYI 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ARXAD (3-isopropylmalate dehydrogenase OS=Arxula adeninivorans GN=LEU2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 59/168 (35.12%), Postives = 97/168 (57.74%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE-----GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V   + +++P++T    +ID+  M+L++NP+  + V+V  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+   N  NP A +LS+  MLR  L L ++AD ++ A+   I  G   TADL G+S+T++   A+
Sbjct:  188 LDKANVLASSRLWRKTVTETIEKEFPQLTLNHQLIDSAAMILIQNPSKMNGVIVTSNMFGDIISDEASVIPGSLGLLPSASLSSLPDKNTAFGLYEPCHGSAPDLP-PNKVNPIATILSAAMMLRLSLNLKEEADAVEKAVSKVIDNG-IVTADLKGASSTTEVGDAV 353          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_COXBU (Isocitrate dehydrogenase [NADP] OS=Coxiella burnetii GN=icd PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 66/191 (34.55%), Postives = 93/191 (48.69%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKY--------------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSST------TSDFTKAICDHL 728
            +HK NIM+ T+G F     EVA K                      +IT ++V+ D     ++  PA + V+   NL GD ISD  A  +GG+G+ P  N+ +  + L EA HG+AP  AG++  NP +L+LS+  MLR+L   + AD +   I   I E K  T D     T      TS F KAI  H+
Sbjct:  238 VHKGNIMKFTEGAFKDWGYEVAVKEFGAKPLDGGPWHVFENPKTGQKITIKDVIADAFLQQILLRPAEYSVIATLNLNGDYISDALAAEVGGIGIAPGANLSD-TVGLFEATHGTAPKYAGQDKVNPGSLILSAEMMLRYLGWKEAADLVVQGIEGAI-ESKTVTYDFARLMTGAKEVSTSQFGKAIIKHI 426          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CANBO (3-isopropylmalate dehydrogenase OS=Candida boidinii GN=LEU2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.951e-19
Identity = 58/177 (32.77%), Postives = 102/177 (57.63%), Query Frame = -2
Query:  219 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL*IFLS 728
            + KAN++  +     +V R + E++P++T +  +ID+  M+LVK+P   + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+  KN  NP A +LS+  ML+  L L  + + ++ A+   + +G   T DLGG+++T++   AI   + + L+
Sbjct:  191 LDKANVLASSRLWRKTVDRVIKEEFPKLTVQHQLIDSAAMILVKSPTKLNGIVITNNMFGDIISDEASVIPGSLGLLPSASLASLPDTNQAFGLYEPCHGSAPDLP-KNKVNPIATILSAAMMLKLSLNLVKEGNAVEEAVRKVLDQG-IMTGDLGGNNSTTEVGDAIAKEVKLLLA 365          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUL (3-isopropylmalate dehydrogenase (Fragment) OS=Buchnera aphidicola subsp. Uroleucon rurale GN=leuB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.951e-19
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  234 FDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST---TSDFTKAICDHL 584
            FD+L+  NL+GDIISD CA + G +G+ PS +  E    L E   GSAPDIAGKN+ANP A +LS   ++R+ ++L   AD+I  ++ S +  G YRTAD+  +++   T++    I D L
Sbjct:    3 FDILLCSNLFGDIISDECAVITGSIGMLPSASFNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSLSMLVRYGMKLKKIADKIDKSVASALKAG-YRTADISNNNSYLKTNEMGDVISDFL 122          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_PICAN (3-isopropylmalate dehydrogenase OS=Pichia angusta GN=LEU2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 60/172 (34.88%), Postives = 96/172 (55.81%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN++  +     +V   +  ++P++T +  +ID+  M+LVK+P   + V+V  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+ G    NP A +LS+  ML+  L+L D    I+ A+ + +  G   TADLGGSS+T +   A+   +
Sbjct:  187 LDKANVLASSRLWRKTVEETIKNEFPQLTVQHQLIDSAAMILVKSPTKLNGVIVTNNMFGDIISDEASVIPGSLGLLPSASLASLPDTNKAFGLYEPCHGSAPDL-GPGKVNPLATILSAAMMLKLSLDLVDAGRAIEQAVKNVLDAG-IMTADLGGSSSTQEVGDAVAQEV 356          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
IDH_STAAC1.057e-1942.40Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
LEU3_RHIME1.381e-1939.743-isopropylmalate dehydrogenase OS=Rhizobium melil... [more]
IDH_STRSL1.804e-1937.21Isocitrate dehydrogenase [NADP] OS=Streptococcus s... [more]
LEU3_CANRU2.356e-1938.463-isopropylmalate dehydrogenase OS=Candida rugosa ... [more]
LEU3_BACTN5.248e-1931.363-isopropylmalate dehydrogenase OS=Bacteroides the... [more]
LEU3_ARXAD5.248e-1935.123-isopropylmalate dehydrogenase OS=Arxula adeniniv... [more]
IDH_COXBU6.854e-1934.55Isocitrate dehydrogenase [NADP] OS=Coxiella burnet... [more]
LEU3_CANBO8.951e-1932.773-isopropylmalate dehydrogenase OS=Candida boidini... [more]
LEU3_BUCUL8.951e-1942.983-isopropylmalate dehydrogenase (Fragment) OS=Buch... [more]
LEU3_PICAN1.527e-1834.883-isopropylmalate dehydrogenase OS=Pichia angusta ... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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