CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CANMA (3-isopropylmalate dehydrogenase OS=Candida maltosa GN=LEU2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 56/170 (32.94%), Postives = 101/170 (59.41%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN++  +     +V + ++E++P ++ +  +ID+  M+L++NP   + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+   N  NP A +LS+ +MLR  L+   +A+ ++ A+   + +G  RTADL G+S+T++   AI +
Sbjct:  196 LDKANVLASSRLWRRTVDKVISEEFPTLSVQHQLIDSAAMILIQNPTKLNGIIITSNMFGDIISDEASVIPGSLGLLPSASLASLPDTNTAFGLYEPCHGSAPDLPA-NKVNPIATILSAASMLRLSLDCVKEAEALEEAVKQVLDKG-IRTADLRGTSSTTEVGDAIVE 363          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3B_ASPNG (3-isopropylmalate dehydrogenase B OS=Aspergillus niger GN=leu2B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 56/171 (32.75%), Postives = 97/171 (56.73%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--------EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +      V   ++ +YP++     + D+  +++  +P   + V++  N +GD++SD    LIG LG+ PS ++         E    L E  HGSAP IAGKN+ANPTA++L    M R+   + ++A +I++A+ + +  G  RT DLGG+S+T +F  A+
Sbjct:  194 LDKANVLASSRLWRRVVENTISVEYPQVKLVHQLADSASLIMATDPRVLNGVILADNTFGDMLSDQAGSLIGTLGVLPSASLDGLPHPGKQEKVRGLYEPTHGSAPTIAGKNIANPTAMILCVSLMFRYSFNMENEARQIEDAVRAVLDRG-LRTPDLGGNSSTQEFGDAV 363          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAES (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=icd PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = -2
Query:  234 AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAE-----GKYRTADLGGSSTTSDFTKAICDHL 665
            AE+  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++ +LSSV ML HL   + AD+I ++I +TIA         R  D     +TSDF   +  ++
Sbjct:  272 AEQEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSEILSSVLMLEHLGWQEAADKITDSIEATIASKIVTYDFARLMDGAKEVSTSDFADELIKNI 421          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAEQ (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=icd PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = -2
Query:  234 AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAE-----GKYRTADLGGSSTTSDFTKAICDHL 665
            AE+  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++ +LSSV ML HL   + AD+I ++I +TIA         R  D     +TSDF   +  ++
Sbjct:  272 AEQEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSEILSSVLMLEHLGWQEAADKITDSIEATIASKIVTYDFARLMDGAKEVSTSDFADELIKNI 421          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_YEAST (3-isopropylmalate dehydrogenase OS=Saccharomyces cerevisiae GN=LEU2 PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 1.994e-18
Identity = 57/172 (33.14%), Postives = 97/172 (56.40%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN++  +     +V   +  ++P +  +  +ID+  M+LVKNP   + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+  KN  NP A +LS+  ML+  L L ++   I++A+   +  G  RT DLGGS++T++   A+ + +
Sbjct:  190 LDKANVLASSRLWRKTVEETIKNEFPTLKVQHQLIDSAAMILVKNPTHLNGIIITSNMFGDIISDEASVIPGSLGLLPSASLASLPDKNTAFGLYEPCHGSAPDLP-KNKVNPIATILSAAMMLKLSLNLPEEGKAIEDAVKKVLDAG-IRTGDLGGSNSTTEVGDAVAEEV 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_YARLI (3-isopropylmalate dehydrogenase OS=Yarrowia lipolytica GN=LEU2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.994e-18
Identity = 55/163 (33.74%), Postives = 94/163 (57.67%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE-----GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSD 728
            + KAN++  +     +V R + +++P++     +ID+  M+L+K P+  + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+ GK   NP A +LS+  ML+  L +    D ++ A+  ++  G   TAD+GGSS+TS+
Sbjct:  202 LDKANVLASSRLWRKTVTRVLKDEFPQLELNHQLIDSAAMILIKQPSKMNGIIITTNMFGDIISDEASVIPGSLGLLPSASLASLPDTNEAFGLYEPCHGSAPDL-GKQKVNPIATILSAAMMLKFSLNMKPAGDAVEAAVKESVEAG-ITTADIGGSSSTSE 362          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU31_BRAJA (3-isopropylmalate dehydrogenase 1 OS=Bradyrhizobium japonicum GN=leuB1 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.994e-18
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG-----IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELH--DKADRIQNAILSTIAEGKYRTADL 728
            + KAN+++ +      V      ++ ++    + +DN  M +V+ P+ FDV+V  N++GDI+SD  A   G LG+ PS ++G         AL E VHGSAPDIAGK +ANP   +LS   MLR + LH  + A  ++ A+ + +A G  RTAD+
Sbjct:  195 VDKANVLETSVLWREEVTALHEAEFSDVELTHLYVDNAAMQIVRAPSQFDVMVTCNIFGDILSDCAAMASGSLGMLPSVSLGPPDRLGRRKALYEPVHGSAPDIAGKGIANPLGSILSVAMMLR-ITLHRPEDAALLEKAVDTALAAGA-RTADI 347          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_DEBHA (3-isopropylmalate dehydrogenase OS=Debaryomyces hansenii GN=LEU2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 57/170 (33.53%), Postives = 98/170 (57.65%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN++  +     +V + ++E++P++T +  +ID+  M+LV++P   + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+  +N  NP A +LS   MLR  L+   +A+ ++ A+   +  G  RT DL GSS+T +   AI +
Sbjct:  205 LDKANVLASSRLWRTTVDKVMSEEFPQLTIQHQLIDSAAMILVQSPTKLNGIIITSNMFGDIISDEASVIPGSLGLLPSASLASLPDTNSAFGLYEPCHGSAPDLT-ENKVNPVATILSVAMMLRLSLDCVPEAEALEKAVGQVLDSG-IRTGDLRGSSSTKEVGDAIAE 372          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CANGA (3-isopropylmalate dehydrogenase OS=Candida glabrata GN=LEU2 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 56/168 (33.33%), Postives = 97/168 (57.74%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V   +  ++P++T +  +ID+  M+LVKNP   + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+  K   NP A +LS+  ML+  L+L ++ + I+ A+   +  G  RTADL G+++T++   A+
Sbjct:  191 LDKANVLASSRLWRKTVEETIKNEFPQLTVQHQLIDSAAMILVKNPTHLNGIIITNNMFGDIISDEASVIPGSLGLLPSASLASLPDKNTAFGLYEPCHGSAPDLP-KGKVNPVATILSAAMMLKLSLDLFEEGEIIEQAVKKVLDSG-IRTADLKGTNSTTEVGDAV 356          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ZYGRC (3-isopropylmalate dehydrogenase OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=LEU2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 58/168 (34.52%), Postives = 94/168 (55.95%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP-NLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V   +  ++P++     +ID+  M+LVK+P   + +V+  NL+GDIISD  + + G LGL PS ++           L E  HGSAPD+  K   NP A++LS+  ML+  L L  + + ++ A+   +  G  RT DLGGS++TS+   AI
Sbjct:  188 LDKANVLASSRLWRKTVEETIKNEFPQLKLNHQLIDSAAMILVKSPTQLNGIVLTSNLFGDIISDEASVIPGSLGLLPSASLASLPDTNEAFGLYEPCHGSAPDLP-KGKVNPIAMILSAAMMLKLSLNLSKEGEAVEKAVKQVLDSG-VRTGDLGGSNSTSEVGDAI 353          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_CANMA1.527e-1832.943-isopropylmalate dehydrogenase OS=Candida maltosa... [more]
LEU3B_ASPNG1.527e-1832.753-isopropylmalate dehydrogenase B OS=Aspergillus n... [more]
IDH_STAES1.527e-1838.00Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAEQ1.527e-1838.00Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
LEU3_YEAST1.994e-1833.143-isopropylmalate dehydrogenase OS=Saccharomyces c... [more]
LEU3_YARLI1.994e-1833.743-isopropylmalate dehydrogenase OS=Yarrowia lipoly... [more]
LEU31_BRAJA1.994e-1837.423-isopropylmalate dehydrogenase 1 OS=Bradyrhizobiu... [more]
LEU3_DEBHA3.401e-1833.533-isopropylmalate dehydrogenase OS=Debaryomyces ha... [more]
LEU3_CANGA4.442e-1833.333-isopropylmalate dehydrogenase OS=Candida glabrat... [more]
LEU3_ZYGRC7.577e-1834.523-isopropylmalate dehydrogenase OS=Zygosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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